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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AT3G03980  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT3G03980AT3G03980GSP:6 PPI:40short-chain dehydrogenase/reductase (SDR) family protein.
Related organ
carpel      urea fraction,1-DE      Related article
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      triton fraction,Schagger 1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cotyledon      soluble fraction,1-DE      Related article
flower      soluble fraction,1-DE      Related article
flower bud      soluble fraction,1-DE      Related article
juvenile leaf      soluble fraction,1-DE      Related article
pollen      combined fractions, 1-DE      Related article
pollen      soluble fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity flow through      Related article
root      soluble fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      soluble fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
shoot      Flow through fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
Representative Gene Model Description
AT3G03980.1:short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G04000.1); Has 84398 Blast hits to 84231 proteins in 2301 species: Archae - 473; Bacteria - 46844; Metazoa - 5449; Fungi - 4315; Plants - 1667; Viruses - 12; Other Eukaryotes - 25638 (source: NCBI BLink).

Related KEGG pathway    
Metabolic Pathways
   |----------Lipid Metabolism
   |--------------------Fatty acid biosynthesisLink to keggView overall Pathway
   |--------------------Biosynthesis of unsaturated fatty acidsLink to keggView overall Pathway
Database cross-references
TAIR Gene: AT3G03980;
IPI: IPI00538026;
UniParc: UPI00000486A1;
REFSEQ_PROVISIONAL: NP_187048.1;
KEGG: AT3G03980;

GSPannotationmethodsrelated
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21952135(yeast-2-hybrid)
AT4G13180short-chain dehydrogenase/reductase (SDR) family proteinEC
AT1G243603-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductaseEC
AT3G04000short-chain dehydrogenase/reductase (SDR) family proteinEC
AT1G63380binding / catalytic/ oxidoreductaseEC

 

Predicted
Functional Partners
annotationTotal
AT2G29370tropinone reductase, putative / tropine dehydrogenase, putative
AT5G06060tropinone reductase, putative / tropine dehydrogenase, putative
AT2G29330No related data.
AT2G29320tropinone reductase, putative / tropine dehydrogenase, putative
AT2G29290tropinone reductase, putative / tropine dehydrogenase, putative
AT2G47140short-chain dehydrogenase/reductase (SDR) family protein
AT2G29310tropinone reductase, putative / tropine dehydrogenase, putative
AT4G03140binding / catalytic/ oxidoreductase
AT2G47130short-chain dehydrogenase/reductase (SDR) family protein
AT2G29340short-chain dehydrogenase/reductase (SDR) family protein
AT3G29260short-chain dehydrogenase/reductase (SDR) family protein
AT3G04000short-chain dehydrogenase/reductase (SDR) family protein
AT3G42960No related data.
AT3G51680short-chain dehydrogenase/reductase (SDR) family protein
AT3G05260short-chain dehydrogenase/reductase (SDR) family protein
AT3G55310binding / catalytic/ oxidoreductase
AT3G26760short-chain dehydrogenase/reductase (SDR) family protein
AT3G55290short-chain dehydrogenase/reductase (SDR) family protein
AT3G26770short-chain dehydrogenase/reductase (SDR) family protein
AT1G07440tropinone reductase, putative / tropine dehydrogenase, putative
AT2G29150tropinone reductase, putative / tropine dehydrogenase, putative
AT2G17845short-chain dehydrogenase/reductase (SDR) family protein
AT3G46170short-chain dehydrogenase/reductase (SDR) family protein
AT2G29350No related data.
AT1G10310short-chain dehydrogenase/reductase (SDR) family protein
AT2G29360tropinone reductase, putative / tropine dehydrogenase, putative
AT2G30670tropinone reductase, putative / tropine dehydrogenase, putative
AT5G18210short-chain dehydrogenase/reductase (SDR) family protein
AT4G05530No related data.
AT2G47120short-chain dehydrogenase/reductase (SDR) family protein
AT4G13180short-chain dehydrogenase/reductase (SDR) family protein
AT1G62610short-chain dehydrogenase/reductase (SDR) family protein
AT1G63380binding / catalytic/ oxidoreductase
AT2G29300tropinone reductase, putative / tropine dehydrogenase, putative

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
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Transcriptional Regulation

TFFamilyConfidenceDetails
AGL3MADSLAT2G03710