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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:CDC48C  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT3G01610CDC48CGSP:4 PPI:94CDC48C; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding.
Subcellar localization
endoplasmic reticulum: Pubmed16621602; nucleus: Pubmed16381842; plasma membrane: Pubmed16621602; cell plate: Pubmed16381842;
Related organ
cell suspension culture      urea fraction,1-DE      Related article
Representative Gene Model Description
AT3G01610.1:CDC48C; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: cell division cycle protein 48, putative / CDC48, putative (TAIR:AT5G03340.1); Has 44379 Blast hits to 26333 proteins in 1885 species: Archae - 1081; Bacteria - 15141; Metazoa - 7091; Fungi - 4121; Plants - 2934; Viruses - 42; Other Eukaryotes - 13969 (source: NCBI BLink).

Related Mutant  
M4232 Related gene:AT3G01610;
Method:T-DNA Insertion_Mutant,mutation site Exon 2 to Exon 4
Phenotype:Embryo Defective,Preglobular
Related PO:embryo  PO:0009009          
Related Datasource Link:SeedGenes Database
*

Database cross-references
TAIR Gene: AT3G01610;
KEGG: AT3G01610;

GSPannotationmethodsrelated
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21952135(yeast-2-hybrid)
AT5G65430(GRF8)GRF8 (GENERAL REGULATORY FACTOR 8); protein binding / protein phosphorylated amino acid bindingtext mining 21094157(Affinity Capture-MS)
AT5G38480(GRF3)GRF3 (GENERAL REGULATORY FACTOR 3); ATP binding / protein binding / protein phosphorylated amino acid bindingtext mining 21094157(Affinity Capture-MS)

 

Predicted
Functional Partners
annotationTotal
AT5G37500No related data.
AT3G22150pentatricopeptide (PPR) repeat-containing protein
AT4G38930ubiquitin fusion degradation UFD1 family protein
AT4G35800No related data.
AT4G34910DEAD/DEAH box helicase, putative (RH16)
AT4G29160No related data.
AT4G26750hydroxyproline-rich glycoprotein family protein
AT4G26600nucleolar protein, putative
AT4G25340immunophilin-related / FKBP-type peptidyl-prolyl cis-trans isomerase-related
AT4G24440transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)
AT4G22720glycoprotease M22 family protein
AT4G16630DEAD/DEAH box helicase, putative (RH28)
AT4G16520No related data.
AT4G10790UBX domain-containing protein
AT4G10710No related data.
AT4G09800No related data.
AT4G01560No related data.
AT4G00720No related data.
AT3G5866060S ribosomal protein-related
AT3G57870No related data.
AT3G57660No related data.
AT3G56190No related data.
AT3G54610No related data.
AT5G65900DEAD/DEAH box helicase, putative
AT5G65360histone H3
AT5G63880No related data.
AT5G58270No related data.
AT5G55920No related data.
AT5G54910DEAD/DEAH box helicase, putative
AT5G48600No related data.
AT5G45400replication protein, putative
AT5G43530SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein
AT5G40030protein kinase, putative
AT5G39740No related data.
AT5G2785060S ribosomal protein L18 (RPL18C)
AT5G20570No related data.
AT5G2000026S proteasome AAA-ATPase subunit, putative
AT5G19990No related data.
AT5G15550transducin family protein / WD-40 repeat family protein
AT5G14640No related data.
AT5G14520pescadillo-related
AT5G10400histone H3
AT5G10390histone H3
AT5G10270No related data.
AT5G09260No related data.
AT5G04600RNA recognition motif (RRM)-containing protein
AT2G21440RNA recognition motif (RRM)-containing protein
AT2G2014026S protease regulatory complex subunit 4, putative
AT2G18220hypothetical protein
AT2G18020No related data.
AT2G06510No related data.
AT2G01650No related data.
AT1G77030ATP binding / ATP-dependent helicase/ RNA binding / helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding
AT1G75560zinc knuckle (CCHC-type) family protein
AT1G6658060S ribosomal protein L10 (RPL10C)
AT1G63780No related data.
AT1G61580No related data.
AT1G53750No related data.
AT1G52930brix domain-containing protein
AT1G50920GTP-binding protein-related
AT1G43170No related data.
AT1G3403040S ribosomal protein S18 (RPS18B)
AT1G29320transducin family protein / WD-40 repeat family protein
AT1G22780No related data.
AT1G13340hypothetical protein
AT1G11870No related data.
AT1G09200histone H3
AT1G07480transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L)
AT3G5387040S ribosomal protein S3 (RPS3B)
AT3G53230cell division cycle protein 48, putative / CDC48, putative
AT3G45770oxidoreductase, zinc-binding dehydrogenase family protein
AT3G27360histone H3
AT3G23890No related data.
AT3G23620brix domain-containing protein
AT3G18600DEAD/DEAH box helicase, putative
AT3G16810No related data.
AT3G15460brix domain-containing protein
AT3G1358060S ribosomal protein L7 (RPL7D)
AT3G12400No related data.
AT3G10640No related data.
AT3G0920060S acidic ribosomal protein P0 (RPP0B)
AT3G07050GTP-binding family protein
AT3G05590No related data.
AT3G03490No related data.
AT3G03380No related data.
AT2G43210UBX domain-containing protein
AT2G36880No related data.
AT2G3448060S ribosomal protein L18A (RPL18aB)
AT5G03340cell division cycle protein 48, putative / CDC48, putative
AT3G09840No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
ATHB1HD-ZIPLAT3G01470
RAV1(2)AP2/EREBPLAT1G13260