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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:ATHB-1  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT3G01470ATHB-1GSP:3 PPI:5ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1); DNA binding / protein homodimerization/ sequence-specific DNA binding / transcription activator/ transcription factor.
Subcellar localization
nucleus: Pubmed16381842;
Representative Gene Model Description
AT3G01470.1:ARABIDOPSIS THALIANA HOMEOBOX 1 (ATHB-1); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, protein homodimerization activity, transcription activator activity, DNA binding; INVOLVED IN: response to salt stress, positive regulation of transcription, response to blue light, regulation of transcription, DNA-dependent, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: stem, fruit, flower, root, leaf; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB16 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 16); sequence-specific DNA binding / transcription activator/ transcription factor (TAIR:AT4G40060.1); Has 10307 Blast hits to 10283 proteins in 459 species: Archae - 0; Bacteria - 0; Metazoa - 8498; Fungi - 180; Plants - 1430; Viruses - 5; Other Eukaryotes - 194 (source: NCBI BLink).

Related Mutant  
M5491 Related gene:AT3G01470;
Method:NULL
Phenotype:AtHB1 knock-down mutants and overexpressors showed shorter and longer hypocotyls, respectively, than wild type (WT)
Related PO:hypocotyl  PO:0020100    
Related Datasource Link:
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Database cross-references
Entrez Gene: h;
TAIR Gene: AT3G01470;
IPI: h;
UniProtKB/TrEMBL: h;
UniParc: h;
REFSEQ_PROVISIONAL: h;
KEGG: AT3G01470;

GSPannotationmethodsrelated
AT4G09000(GRF1)14-3-3-like protein GF14 chi / general regulatory factor 1 (GRF1)text mining 21094157(Affinity Capture-MS)
AT2G46020(BRM)transcription regulatory protein SNF2, putativetext mining 23449474(yeast-2-hybrid)
AT1G55520(TBP2)TBP2 (TATA BINDING PROTEIN 2); DNA binding / RNA polymerase II transcription factor/ TATA-binding protein bindingtext mining 24531799(Reconstituted Complex)

 

Predicted
Functional Partners
annotationTotal
AT5G56030No related data.
AT5G61150No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
AGMADSHAT4G18960
AGL1MADSLAT3G58780
AGL15MADSLAT5G13790
AGL2MADSLAT5G15800
AGL3MADSLAT2G03710
ARR1GARP/ARR-BLAT3G16857
ARR10GARPLAT4G31920
RAV1(2)AP2/EREBPHAT1G13260
TGA1bZIPHAT5G65210

Related PPIs for TFs
TF1TF2PPI
AT4G18960AT3G58780GO
AT4G18960AT5G13790GO
AT4G18960AT5G15800GO
AT3G58780AT5G13790GO
AT3G58780AT5G15800GO