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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AGP16  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT2G46330AGP16GSP:18 PPI:19AGP16 (ARABINOGALACTAN PROTEIN 16).
Subcellar localization
extracellular: Pubmed16356755;
Representative Gene Model Description
AT2G46330.1:ARABINOGALACTAN PROTEIN 16 (AGP16); LOCATED IN: anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1070 (InterPro:IPR009424); BEST Arabidopsis thaliana protein match is: AGP20 (TAIR:AT3G61640.1); Has 61 Blast hits to 61 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

AT2G46330.2:ARABINOGALACTAN PROTEIN 16 (AGP16); LOCATED IN: anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1070 (InterPro:IPR009424); BEST Arabidopsis thaliana protein match is: AGP20 (TAIR:AT3G61640.1); Has 13 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Related Mutant  
    M2706 Related gene:AT2G46330; AT2G46340; AT3G04610;
    Method:T-DNA insertion
    Phenotype:General,files
    Related Datasource Link:Riken database
    *

    Database cross-references
    TAIR Gene: AT2G46330;
    IPI: IPI00542469; IPI00541523;
    UniParc: UPI0000196EF7; UPI00000A2CBD;
    REFSEQ_PROVISIONAL: NP_566070.3; NP_973699.1;
    KEGG: AT2G46330;

    GSPannotationmethodsrelated
    AT2G26300(GP_ALPHA_1)GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1); GTP binding / GTPase/ channel regulator/ signal transducertext mining 21036873(yeast-2-hybrid assay:FDS1176001)
    AT3G12180cornichon family proteintext mining 24833385(PCA)
    AT1G14360(UTR3)UTR3 (UDP-GALACTOSE TRANSPORTER 3); pyrimidine nucleotide sugar transmembrane transportertext mining 24833385(PCA)
    AT2G41705camphor resistance CrcB family proteintext mining 24833385(PCA)
    AT1G47640hypothetical proteintext mining 24833385(PCA)
    AT1G29060hypothetical proteintext mining 24833385(PCA)
    AT5G49540hypothetical proteintext mining 24833385(PCA)
    AT3G21580cobalt ion transmembrane transportertext mining 24833385(PCA)
    AT5G35460hypothetical proteintext mining 24833385(PCA)
    AT2G16595hypothetical proteintext mining 24833385(PCA)
    AT4G10080hypothetical proteintext mining 24833385(PCA)
    AT5G52420hypothetical proteintext mining 24833385(PCA)
    AT2G26300(GP ALPHA 1)No related data.text mining 21952135(yeast-2-hybrid)
    AT1G14020hypothetical proteintext mining 24833385(PCA)
    AT1G34640hypothetical proteintext mining 24833385(PCA)
    AT3G66654peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteintext mining 24833385(PCA)
    AT4G23010(UTR2)UDP-galactose transporter-relatedtext mining 24833385(PCA)
    AT1G01620(PIP1C)PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C); water channeltext mining 24833385(PCA)

     

    Predicted
    Functional Partners
    annotationTotal
    AT5G24105No related data.

    O: Ortholog interaction datasets
    G: Shared biological function:Go Ontology
    E: Co-expression
    F: Gene fusion method
    N: Gene neighbors method
    P: Phylogenetic profile method
    D: Enriched domain pair
    What does the displayed number mean when your mouse moved over a certain icon?(LR)


    Transcriptional Regulation

    Transcription factorTarget geneDetail infoRelated Artical
    SEPALLATA3[AT1G24260]AT2G46330No detail info. 19385720

     

    TFFamilyConfidenceDetails
    ARR1GARP/ARR-BLAT3G16857
    ATHB1HD-ZIPLAT3G01470