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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:RAB6A  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT2G44610RAB6AGSP:6 PPI:131RAB6A; GTP binding / protein binding.
Subcellar localization
plasma membrane: Pubmed17644812; vacuole: Pubmed17151019;
Related organ
carpel      detergent fraction,1-DE      Related article
carpel      urea fraction,1-DE      Related article
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      triton fraction,Schagger 1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
cotyledon      SDS fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
pollen      urea fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
root      soluble fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
Representative Gene Model Description
AT2G44610.1:RAB6A; FUNCTIONS IN: protein binding, GTP binding; INVOLVED IN: secretion by cell; LOCATED IN: plasma membrane, membrane fraction; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab6-related (InterPro:IPR015600); BEST Arabidopsis thaliana protein match is: AtRABH1e (Arabidopsis Rab GTPase homolog H1e); GTP binding (TAIR:AT5G10260.1); Has 21396 Blast hits to 21369 proteins in 599 species: Archae - 17; Bacteria - 112; Metazoa - 12092; Fungi - 2452; Plants - 1836; Viruses - 19; Other Eukaryotes - 4868 (source: NCBI BLink).

Predicted Mutant Phenotypes
collective leaf structure    PO:0025022;    seedling  PO:0008037;    
Database cross-references
TAIR Gene: AT2G44610;
IPI: IPI00530291;
UniParc: UPI00000A0A3A;
REFSEQ_PROVISIONAL: NP_181989.1;
KEGG: AT2G44610;

GSPannotationmethodsrelated
AT1G79830(GC5)GC5 (golgin candidate 5); protein bindingtext mining 18182439(pull-down)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G79830(GC5)GC5 (golgin candidate 5); protein bindingtext mining 19490533(FRET)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21952135(yeast-2-hybrid)
AT5G66030(ATGRIP)ATGRIP; protein bindingtext mining 19490533(FRET)
AT1G71270(POK)POK (POKY POLLEN TUBE)text mining 19490533(FRET)

 

Predicted
Functional Partners
annotationTotal
AT3G48040No related data.
AT2G22290No related data.
AT1G02130No related data.
AT1G07140No related data.
AT1G08770No related data.
AT1G09330hypothetical protein
AT1G09630No related data.
AT1G10130No related data.
AT1G10630No related data.
AT1G28490No related data.
AT1G29330No related data.
AT1G31870hypothetical protein
AT1G49760No related data.
AT1G50030No related data.
AT1G52740No related data.
AT1G54320LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
AT1G54370No related data.
AT1G55250No related data.
AT1G60970clathrin adaptor complex small chain family protein
AT1G64550No related data.
AT1G67730No related data.
AT1G76400ribophorin I family protein
AT1G78900No related data.
AT1G79590No related data.
AT2G02090No related data.
AT2G15240UNC-50 family protein
AT2G17790No related data.
AT2G17980No related data.
AT2G18020No related data.
AT2G18840integral membrane Yip1 family protein
AT2G19600No related data.
AT2G20470kinase
AT2G34840coatomer protein epsilon subunit family protein / COPE family protein
AT2G40290eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative
AT2G41500No related data.
AT2G43160epsin N-terminal homology (ENTH) domain-containing protein
AT2G44680No related data.
AT2G44950No related data.
AT2G45200No related data.
AT2G45790No related data.
AT2G47770benzodiazepine receptor-related
AT3G02580No related data.
AT3G06540GDP dissociation inhibitor family protein / Rab GTPase activator family protein
AT3G12810No related data.
AT3G14080small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative
AT3G18140transducin family protein / WD-40 repeat family protein
AT3G18430calcium-binding EF hand family protein
AT3G22110No related data.
AT3G22590RNA pol II accessory factor Cdc73 family protein
AT3G24350No related data.
AT3G27530No related data.
AT3G44530No related data.
AT3G45780No related data.
AT3G47120RNA recognition motif (RRM)-containing protein
AT3G47810No related data.
AT3G53710No related data.
AT3G54860No related data.
AT3G58730vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)
AT3G61710autophagy protein Apg6 family
AT3G62240zinc finger (C2H2 type) family protein
AT3G62290No related data.
AT4G02195No related data.
AT4G04910No related data.
AT4G14350protein kinase family protein
AT4G16444hypothetical protein
AT4G17530No related data.
AT4G24190No related data.
AT4G27690No related data.
AT4G30890No related data.
AT4G34450coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative
AT4G36630No related data.
AT5G05010clathrin adaptor complexes medium subunit-related
AT5G06140No related data.
AT5G09250No related data.
AT5G11980conserved oligomeric Golgi complex component-related / COG complex component-related
AT5G12210geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative
AT5G12250No related data.
AT5G12370No related data.
AT5G14030translocon-associated protein beta (TRAPB) family protein
AT5G16830No related data.
AT5G19320No related data.
AT5G359103'-5' exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein
AT5G37055No related data.
AT5G42950GYF domain-containing protein
AT5G45600No related data.
AT5G47180vesicle-associated membrane family protein / VAMP family protein
AT5G52640No related data.
AT5G55310No related data.
AT5G56030No related data.
AT5G58060No related data.
AT5G61150No related data.
AT5G45130No related data.
AT4G19640No related data.
AT4G39890No related data.
AT3G63130No related data.
AT5G09550RAB GDP-dissociation inhibitor
AT3G54840No related data.
AT3G16100No related data.
AT1G22740No related data.
AT3G15060No related data.
AT4G35860No related data.
AT1G49300No related data.
AT1G16920No related data.
AT2G33870No related data.
AT3G18820No related data.
AT5G64990No related data.
AT5G47520No related data.
AT1G06400No related data.
AT4G18800No related data.
AT5G47960No related data.
AT4G18430No related data.
AT5G10260No related data.
AT3G53610No related data.
AT4G17170No related data.
AT3G46060No related data.
AT4G17160No related data.
AT1G28550No related data.
AT5G59840Ras-related GTP-binding family protein
AT5G03520No related data.
AT2G21880No related data.
AT1G07410No related data.
AT2G43130No related data.
AT5G60860No related data.
AT2G31680No related data.
AT5G45750No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

Transcription factorTarget geneDetail infoRelated Artical
SEPALLATA3[AT1G24260]AT2G44610No detail info. 19385720

 

TFFamilyConfidenceDetails
TGA1bZIPLAT5G65210