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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:ATCS  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT2G44350ATCSGSP:4 PPI:58ATCS; ATP binding / ATP citrate synthase/ citrate (SI)-synthase.
Subcellar localization
mitochondrion: Pubmed16381842; extracellular: Pubmed15157177; plastid: Pubmed18431481;
Related organ
carpel      detergent fraction,1-DE      Related article
carpel      urea fraction,1-DE      Related article
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      detergent fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      triton fraction,Schagger 1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
cotyledon      SDS fraction,1-DE      Related article
cotyledon      soluble fraction,1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower      soluble fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
flower bud      soluble fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
juvenile leaf      soluble fraction,1-DE      Related article
pollen      combined fractions, 1-DE      Related article
pollen      soluble fraction, 1-DE      Related article
pollen      urea fraction, 1-DE      Related article
pollen      cyclohexane fraction, 1-DE      Related article
pollen      detergent fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity enriched      Related article
pollen      total extract, ICAT labelling, avidin affinity flow through      Related article
root      soluble fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
seed      soluble fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      soluble fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchae; IMAC affinity chromatography ng      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT2G44350.1:ATCS; FUNCTIONS IN: citrate (SI)-synthase activity, ATP citrate synthase activity, ATP binding; INVOLVED IN: response to cadmium ion, tricarboxylic acid cycle; LOCATED IN: mitochondrion, cell wall, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Citrate synthase-like, large alpha subdomain (InterPro:IPR016142), Citrate synthase, eukaryotic (InterPro:IPR010109), Citrate synthase-like (InterPro:IPR002020), Citrate synthase-like, core (InterPro:IPR016141); BEST Arabidopsis thaliana protein match is: CSY5 (citrate synthase 5); citrate (SI)-synthase/ transferase, transferring acyl groups, acyl groups converted into alkyl on transfer (TAIR:AT3G60100.1); Has 7180 Blast hits to 7176 proteins in 1667 species: Archae - 104; Bacteria - 3847; Metazoa - 240; Fungi - 208; Plants - 100; Viruses - 0; Other Eukaryotes - 2681 (source: NCBI BLink).

AT2G44350.2:ATCS; FUNCTIONS IN: citrate (SI)-synthase activity, ATP citrate synthase activity, ATP binding; INVOLVED IN: response to cadmium ion, tricarboxylic acid cycle; LOCATED IN: mitochondrion, cell wall, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Citrate synthase-like, large alpha subdomain (InterPro:IPR016142), Citrate synthase, eukaryotic (InterPro:IPR010109), Citrate synthase-like (InterPro:IPR002020), Citrate synthase-like, core (InterPro:IPR016141); BEST Arabidopsis thaliana protein match is: CSY5 (citrate synthase 5); citrate (SI)-synthase/ transferase, transferring acyl groups, acyl groups converted into alkyl on transfer (TAIR:AT3G60100.1); Has 7180 Blast hits to 7176 proteins in 1667 species: Archae - 104; Bacteria - 3847; Metazoa - 240; Fungi - 208; Plants - 100; Viruses - 0; Other Eukaryotes - 2681 (source: NCBI BLink).

Related KEGG pathway    
Metabolic Pathways
   |----------Carbohydrate Metabolism
   |--------------------Citrate cycle (TCA cycle)Link to keggView overall Pathway
   |--------------------Glyoxylate and dicarboxylate metabolismLink to keggView overall Pathway
Database cross-references
TAIR Gene: AT2G44350;
IPI: IPI00543655; IPI00539059;
UniParc: UPI0000127A01; UPI000017600F;
REFSEQ_PROVISIONAL: NP_566016.1; NP_850415.1;
KEGG: AT2G44350;

GSPannotationmethodsrelated
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G06150(CYC1BAT)CYC1BAT; cyclin-dependent protein kinase regulatortext mining 20706207(Affinity Capture-MS)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21952135(yeast-2-hybrid)
AT1G47220(CYCA3;3)CYCA3;3 (Cyclin A3;3); cyclin-dependent protein kinase regulatortext mining 20706207(Affinity Capture-MS)

 

Predicted
Functional Partners
annotationTotal
AT3G55380No related data.
AT3G55610No related data.
AT3G55620No related data.
AT4G01370No related data.
AT4G03240No related data.
AT4G10570No related data.
AT4G22220No related data.
AT4G26970aconitate hydratase/ copper ion binding
AT4G29510No related data.
AT4G31050lipoyltransferase (LIP2p)
AT4G35020No related data.
AT4G38130No related data.
AT5G01340mitochondrial substrate carrier family protein
AT5G03290isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative
AT5G093002-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative
AT5G16630No related data.
AT5G20570No related data.
AT5G22060No related data.
AT5G36880acetyl-CoA synthetase, putative / acetate-CoA ligase, putative
AT5G50850No related data.
AT5G52640No related data.
AT5G550702-oxoacid dehydrogenase family protein
AT5G56030No related data.
AT5G60160aspartyl aminopeptidase, putative
AT5G62040brother of FT and TFL1 protein (BFT)
AT5G65940No related data.
AT5G66100La domain-containing protein
AT1G02170No related data.
AT1G04410malate dehydrogenase, cytosolic, putative
AT1G07030mitochondrial substrate carrier family protein
AT1G17160pfkB-type carbohydrate kinase family protein
AT1G32470glycine cleavage system H protein, mitochondrial, putative
AT1G48030No related data.
AT1G53240malate dehydrogenase (NAD), mitochondrial
AT1G54220dihydrolipoamide S-acetyltransferase, putative
AT1G55510No related data.
AT1G5986017.6 kDa class I heat shock protein (HSP17.6A-CI)
AT1G59900No related data.
AT1G69670No related data.
AT1G75560zinc knuckle (CCHC-type) family protein
AT1G80670transducin family protein / WD-40 repeat family protein
AT2G05710aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative
AT2G17130No related data.
AT2G17190ubiquitin family protein
AT2G32400No related data.
AT3G02540No related data.
AT3G06540GDP dissociation inhibitor family protein / Rab GTPase activator family protein
AT3G06850No related data.
AT3G23940dehydratase family
AT3G26618No related data.
AT3G28715H+-transporting two-sector ATPase, putative
AT3G45640No related data.
AT3G47520No related data.
AT3G60100No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
AGL3MADSLAT2G03710
RAV1(2)AP2/EREBPLAT1G13260