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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:CYP98A3  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT2G40890CYP98A3GSP:5 PPI:10CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3); monooxygenase/ p-coumarate 3-hydroxylase.
Subcellar localization
endoplasmic reticulum: Pubmed16618929; mitochondrion: Pubmed15276431; plasma membrane: Pubmed17317660;
Related organ
carpel      detergent fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      detergent fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      triton fraction,Schagger 1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
shoot      Flow through fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
Representative Gene Model Description
AT2G40890.1:cytochrome P450, family 98, subfamily A, polypeptide 3 (CYP98A3); FUNCTIONS IN: monooxygenase activity, p-coumarate 3-hydroxylase activity; INVOLVED IN: coumarin biosynthetic process, lignin biosynthetic process, phenylpropanoid biosynthetic process, flavonoid biosynthetic process; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, microsome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP98A9; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G74550.1); Has 23887 Blast hits to 23748 proteins in 1284 species: Archae - 21; Bacteria - 2263; Metazoa - 10403; Fungi - 4471; Plants - 5771; Viruses - 3; Other Eukaryotes - 955 (source: NCBI BLink).

Related KEGG pathway    
Metabolic Pathways
   |----------Biosynthesis of Secondary Metabolites
   |--------------------Stilbene, coumarine and lignin biosynthesisLink to keggView overall Pathway
   |--------------------Flavonoid biosynthesisLink to keggView overall Pathway
Predicted Mutant Phenotypes
phloem    PO:0005417;    
Database cross-references
TAIR Gene: AT2G40890;
IPI: IPI00529457;
UniParc: UPI000004952E;
REFSEQ_PROVISIONAL: NP_850337.1;
KEGG: AT2G40890;

GSPannotationmethodsrelated
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G08140(CHX6A)No related data.text mining 24833385(PCA)
AT4G15380(CYP705A4)CYP705A4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen bindingtext mining 24833385(PCA)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21952135(yeast-2-hybrid)
AT3G53190pectate lyase family proteintext mining 24833385(PCA)

 

Predicted
Functional Partners
annotationTotal
AT3G14630No related data.
AT4G39510No related data.
AT5G57740No related data.
AT3G04130pentatricopeptide (PPR) repeat-containing protein
AT1G74540No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
AGMADSLAT4G18960
AGL3MADSLAT2G03710
ARR10GARPLAT4G31920
ATHB1HD-ZIPLAT3G01470
GATA-1C2C2(Zn) GATALAT3G24050
RAV1(2)AP2/EREBPLAT1G13260
TGA1bZIPLAT5G65210