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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:LTP2  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT2G38530LTP2GSP:3 PPI:5LTP2 (LIPID TRANSFER PROTEIN 2); lipid binding.
Subcellar localization
extracellular: Pubmed16356755; plasma membrane: Pubmed16618929;
Related organ
carpel      soluble fraction,1-DE      Related article
cotyledon      soluble fraction,1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower      soluble fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
juvenile leaf      soluble fraction,1-DE      Related article
root      soluble fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
seed      soluble fraction,1-DE      Related article
shoot      Flow through fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
Representative Gene Model Description
AT2G38530.1:LIPID TRANSFER PROTEIN 2 (LTP2); FUNCTIONS IN: lipid binding; INVOLVED IN: phospholipid transfer to membrane; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: LP1; calmodulin binding (TAIR:AT2G38540.1); Has 841 Blast hits to 841 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 838; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT2G38530;
IPI: IPI00548876;
UniParc: UPI0000000E52;
REFSEQ_PROVISIONAL: NP_181387.1;
KEGG: AT2G38530;

GSPannotationmethodsrelated
AT4G17730(SYP23)SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G76500(SOB3)SOB3 (SUPPRESSOR OF PHYB-4#3); DNA bindingtext mining 24218605(yeast-2-hybrid)
AT4G17730(SYP23)SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptortext mining 21952135(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT3G51600No related data.
AT2G38540No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

Transcription factorTarget geneDetail infoRelated Artical
SEPALLATA3[AT1G24260]AT2G38530No detail info. 19385720

 

TFFamilyConfidenceDetails
AGL1MADSHAT3G58780
AGL15MADSLAT5G13790
ATHB1HD-ZIPHAT3G01470
ATHB5HD-ZIPHAT5G65310
RAV1(2)AP2/EREBPHAT1G13260
TGA1bZIPHAT5G65210

Related PPIs for TFs
TF1TF2PPI
AT3G58780AT5G13790GO