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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AT2G37190  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT2G37190AT2G37190GSP:8 PPI:1360S ribosomal protein L12 (RPL12A).
Subcellar localization
chloroplast    Based on Chloroplast Proteomics data;
Related organ
carpel      detergent fraction,1-DE      Related article
carpel      urea fraction,1-DE      Related article
carpel      soluble fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
cotyledon      SDS fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
pollen      soluble fraction, 1-DE      Related article
pollen      cyclohexane fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity flow through      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
seed      soluble fraction,1-DE      Related article
silique      soluble fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
shoot      Phosphopeptide enriched fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Phosphopeptide enriched fraction: SDS total extract of A. thaliana shoots; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
Related complex
Ribosome, eukaryotes
Representative Gene Model Description
AT2G37190.1:60S ribosomal protein L12 (RPL12A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to cold, ribosome biogenesis; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L11 (InterPro:IPR000911); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L12 (RPL12B) (TAIR:AT3G53430.1); Has 1152 Blast hits to 1152 proteins in 433 species: Archae - 208; Bacteria - 278; Metazoa - 292; Fungi - 109; Plants - 81; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).

Related KEGG pathway    
Genetic Information Processing
   |----------Translation
   |--------------------RibosomeLink to keggView overall Pathway
Predicted Mutant Phenotypes
phloem    PO:0005417;    
Database cross-references
TAIR Gene: AT2G37190;
IPI: IPI00516681;
UniParc: UPI0000000AC0;
REFSEQ_PROVISIONAL: NP_181256.1;
KEGG: AT2G37190;

GSPannotationmethodsrelated
AT4G17730(SYP23)SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G18660zinc finger (C3HC4-type RING finger) family proteintext mining 21798944(yeast-2-hybrid)
AT4G17730(SYP23)SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptortext mining 21952135(yeast-2-hybrid)
AT1G22300(GRF10)GRF10 (GENERAL REGULATORY FACTOR 10); ATP binding / protein binding / protein phosphorylated amino acid bindingtext mining 21766784(Affinity Capture-MS)
AT4G09000(GRF1)14-3-3-like protein GF14 chi / general regulatory factor 1 (GRF1)text mining 21766784(Affinity Capture-MS)
AT4G29040(RPT2a)RPT2a (regulatory particle AAA-ATPase 2a); ATPasetext mining 24846764(Affinity Capture-MS)
AT3G11820(SYP121)SYP121 (SYNTAXIN OF PLANTS 121); SNAP receptor/ protein anchortext mining 24556609(Affinity Capture-MS)
AT5G03240(UBQ3)UBQ3 (POLYUBIQUITIN 3); protein bindingtext mining 19429840(Affinity Capture-MS)

 

Predicted
Functional Partners
annotationTotal
AT5G6067060S ribosomal protein L12 (RPL12C)
AT4G25630No related data.
AT1G13160SDA1 family protein
AT1G04170No related data.
AT3G5343060S ribosomal protein L12 (RPL12B)

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
AGL1MADSLAT3G58780
AGL2MADSLAT5G15800
AGL3MADSLAT2G03710
ARR10GARPLAT4G31920
ATHB1HD-ZIPLAT3G01470
ATHB5HD-ZIPLAT5G65310
RAV1(2)AP2/EREBPHAT1G13260
TGA1bZIPHAT5G65210

Related PPIs for TFs
TF1TF2PPI
AT3G58780AT5G15800GO