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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:CSD2  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT2G28190CSD2GSP:6 PPI:180CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2); superoxide dismutase.
Subcellar localization
plastid: Pubmed16381842;
Related organ
carpel      detergent fraction,1-DE      Related article
carpel      urea fraction,1-DE      Related article
carpel      soluble fraction,1-DE      Related article
cotyledon      SDS fraction,1-DE      Related article
cotyledon      soluble fraction,1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower      soluble fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
flower bud      soluble fraction,1-DE      Related article
juvenile leaf      soluble fraction,1-DE      Related article
pollen      combined fractions, 1-DE      Related article
pollen      soluble fraction, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity flow through      Related article
root      soluble fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      soluble fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
shoot      Flow through fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchae; IMAC affinity chromatography ng      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT2G28190.1:COPPER/ZINC SUPEROXIDE DISMUTASE 2 (CSD2); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: in 6 processes; LOCATED IN: thylakoid, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc, binding site (InterPro:IPR018152), Superoxide dismutase, copper/zinc binding (InterPro:IPR001424); BEST Arabidopsis thaliana protein match is: CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1); superoxide dismutase (TAIR:AT1G08830.2); Has 3383 Blast hits to 3372 proteins in 1008 species: Archae - 6; Bacteria - 1194; Metazoa - 972; Fungi - 212; Plants - 552; Viruses - 130; Other Eukaryotes - 317 (source: NCBI BLink).

Predicted Mutant Phenotypes
shoot system    PO:0009006;    primary root  PO:0020127;    root    PO:0009005;    
Database cross-references
TAIR Gene: AT2G28190;
IPI: IPI00520632;
UniParc: UPI00000017E2;
REFSEQ_PROVISIONAL: NP_565666.1;
KEGG: AT2G28190;

GSPannotationmethodsrelated
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G21630(CERK1)CERK1 (CHITIN ELICITOR RECEPTOR KINASE 1); kinase/ receptor signaling protein/ transmembrane receptor protein kinasetext mining 25036661(yeast-2-hybrid)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21952135(yeast-2-hybrid)
AT5G18100(CSD3)CSD3 (copper/zinc superoxide dismutase 3); superoxide dismutaseEC
AT1G08830(CSD1)CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1); superoxide dismutaseEC
AT3G56350superoxide dismutase (Mn), putative / manganese superoxide dismutase, putativeEC

 

Predicted
Functional Partners
annotationTotal
AT1G12520No related data.
AT1G07370No related data.
AT1G07810No related data.
AT1G08110lactoylglutathione lyase, putative / glyoxalase I, putative
AT1G09200histone H3
AT1G10130No related data.
AT1G10930No related data.
AT1G14400No related data.
AT1G14810semialdehyde dehydrogenase family protein
AT1G16310cation efflux family protein
AT1G17130cell cycle control protein-related
AT1G17790DNA-binding bromodomain-containing protein
AT1G27310No related data.
AT1G27970No related data.
AT1G29990No related data.
AT1G30400No related data.
AT1G31360No related data.
AT1G32330No related data.
AT1G34150tRNA pseudouridine synthase family protein
AT1G43560No related data.
AT1G44900ATP binding / DNA binding / DNA-dependent ATPase
AT1G46264No related data.
AT1G50320No related data.
AT1G50670OTU-like cysteine protease family protein
AT1G51610cation efflux family protein / metal tolerance protein, putative (MTPc4)
AT1G54340No related data.
AT1G55250No related data.
AT1G55750transcription factor-related
AT1G63160replication factor C 40 kDa, putative
AT1G63700No related data.
AT1G67280lactoylglutathione lyase, putative / glyoxalase I, putative
AT1G73150No related data.
AT1G76030vacuolar ATP synthase subunit B / V-ATPase B subunit / vacuolar proton pump B subunit / V-ATPase 57 kDa subunit
AT1G76310No related data.
AT1G76760No related data.
AT1G79930No related data.
AT2G02760No related data.
AT2G16600No related data.
AT2G20470kinase
AT2G20560DNAJ heat shock family protein
AT2G23150No related data.
AT2G30360No related data.
AT2G30970No related data.
AT2G31510IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)
AT2G3161040S ribosomal protein S3 (RPS3A)
AT2G31970No related data.
AT2G32850protein kinase family protein
AT2G33840tRNA synthetase class I (W and Y) family protein
AT2G34660No related data.
AT2G34900No related data.
AT2G34970eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein
AT2G36530No related data.
AT2G36880No related data.
AT2G38560No related data.
AT2G38810No related data.
AT2G39450No related data.
AT2G40660tRNA-binding region domain-containing protein
AT2G41490No related data.
AT2G44740No related data.
AT2G44950No related data.
AT2G47830cation efflux family protein / metal tolerance protein, putative (MTPc1)
AT3G07370No related data.
AT3G08710No related data.
AT3G08720No related data.
AT3G09660No related data.
AT3G10920No related data.
AT3G116302-cys peroxiredoxin, chloroplast (BAS1)
AT3G11710No related data.
AT3G12110No related data.
AT3G12580No related data.
AT3G14530geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative
AT3G15360No related data.
AT3G18520No related data.
AT3G18580single-strand-binding family protein
AT3G19210No related data.
AT3G20020No related data.
AT3G21870No related data.
AT3G22110No related data.
AT3G22830No related data.
AT3G24520No related data.
AT3G25100No related data.
AT3G25570adenosylmethionine decarboxylase family protein
AT3G27360histone H3
AT3G28040leucine-rich repeat transmembrane protein kinase, putative
AT3G29320glucan phosphorylase, putative
AT3G43810No related data.
AT3G45640No related data.
AT3G46970No related data.
AT3G49660transducin family protein / WD-40 repeat family protein
AT3G50360No related data.
AT3G5387040S ribosomal protein S3 (RPS3B)
AT3G5389040S ribosomal protein S21 (RPS21B)
AT3G54660No related data.
AT3G54700carbohydrate transmembrane transporter/ phosphate transmembrane transporter/ sugar:hydrogen symporter
AT3G56240No related data.
AT3G56490zinc-binding protein, putative / protein kinase C inhibitor, putative
AT3G57220UDP-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate transferase, putative
AT3G58060cation efflux family protein / metal tolerance protein, putative (MTPc3)
AT3G60750transketolase, putative
AT3G63120No related data.
AT4G01370No related data.
AT4G08960phosphotyrosyl phosphatase activator (PTPA) family protein
AT4G10760No related data.
AT4G11010No related data.
AT4G11660No related data.
AT4G13780methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative
AT4G13980No related data.
AT4G14540No related data.
AT4G14880No related data.
AT4G15560No related data.
AT4G17190No related data.
AT4G17750No related data.
AT4G18880No related data.
AT4G20330transcription initiation factor-related
AT4G22220No related data.
AT4G24040No related data.
AT4G25230No related data.
AT4G26840No related data.
AT4G27180No related data.
AT4G28480DNAJ heat shock family protein
AT4G30870No related data.
AT4G31360selenium binding
AT4G33640hypothetical protein
AT4G34870No related data.
AT4G35740No related data.
AT4G36810No related data.
AT4G36990No related data.
AT4G37910No related data.
AT4G38630No related data.
AT4G38740No related data.
AT4G39830L-ascorbate oxidase, putative
AT5G06290No related data.
AT5G06410DNAJ heat shock N-terminal domain-containing protein
AT5G09250No related data.
AT5G10390histone H3
AT5G10400histone H3
AT5G11520No related data.
AT5G13120peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein
AT5G13680No related data.
AT5G13710No related data.
AT5G15400U-box domain-containing protein
AT5G15950adenosylmethionine decarboxylase family protein
AT5G20850No related data.
AT5G22330No related data.
AT5G23310No related data.
AT5G25150No related data.
AT5G26600catalytic/ pyridoxal phosphate binding
AT5G26680endonuclease, putative
AT5G39950No related data.
AT5G42020No related data.
AT5G43500No related data.
AT5G43530SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein
AT5G45710No related data.
AT5G48120binding
AT5G48580No related data.
AT5G50320No related data.
AT5G51100No related data.
AT5G54260No related data.
AT5G55160No related data.
AT5G55300No related data.
AT5G55310No related data.
AT5G56140KH domain-containing protein
AT5G57040lactoylglutathione lyase family protein / glyoxalase I family protein
AT5G57450No related data.
AT5G60640No related data.
AT5G61150No related data.
AT5G64350No related data.
AT5G65360histone H3
AT5G65720No related data.
AT5G66100La domain-containing protein
AT5G66130No related data.
AT5G66760No related data.
AT5G67270No related data.
AT5G67330No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

Transcription factorTarget geneDetail infoRelated Artical
SEPALLATA3[AT1G24260]AT2G28190No detail info. 19385720

 

TFFamilyConfidenceDetails
AGMADSLAT4G18960
AGL1MADSLAT3G58780
AGL15MADSLAT5G13790
AGL2MADSLAT5G15800
AGL3MADSLAT2G03710
RAV1(2)AP2/EREBPLAT1G13260
TGA1bZIPHAT5G65210

Related PPIs for TFs
TF1TF2PPI
AT4G18960AT3G58780GO
AT4G18960AT5G13790GO
AT4G18960AT5G15800GO
AT3G58780AT5G13790GO
AT3G58780AT5G15800GO