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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AXS1  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT2G27860AXS1GSP:8 PPI:9AXS1 (UDP-D-apiose/UDP-D-xylose synthase 1); NAD or NADH binding / UDP-glucuronate decarboxylase.
Related organ
carpel      detergent fraction,1-DE      Related article
carpel      urea fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      detergent fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      triton fraction,Schagger 1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cotyledon      SDS fraction,1-DE      Related article
cotyledon      soluble fraction,1-DE      Related article
flower      soluble fraction,1-DE      Related article
flower bud      soluble fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
pollen      combined fractions, 1-DE      Related article
pollen      soluble fraction, 1-DE      Related article
pollen      urea fraction, 1-DE      Related article
pollen      cyclohexane fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity flow through      Related article
root      soluble fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      soluble fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
shoot      Flow through fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT2G27860.1:UDP-D-apiose/UDP-D-xylose synthase 1 (AXS1); FUNCTIONS IN: NAD or NADH binding, UDP-glucuronate decarboxylase activity; INVOLVED IN: nucleotide-sugar biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2); UDP-glucuronate decarboxylase (TAIR:AT1G08200.1); Has 13303 Blast hits to 13296 proteins in 1525 species: Archae - 303; Bacteria - 6769; Metazoa - 230; Fungi - 58; Plants - 756; Viruses - 11; Other Eukaryotes - 5176 (source: NCBI BLink).

Related KEGG pathway    
Metabolic Pathways
   |----------Carbohydrate Metabolism
   |--------------------Nucleotide sugars metabolismLink to keggView overall Pathway
Database cross-references
TAIR Gene: AT2G27860;
IPI: IPI00541963;
UniParc: UPI000004859B;
REFSEQ_PROVISIONAL: NP_180353.1;
KEGG: AT2G27860;

GSPannotationmethodsrelated
AT5G43850(ARD4)ARD4; acireductone dioxygenase [iron(II)-requiring]/ metal ion bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G18080(ATARCA)ATARCA; nucleotide bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G18130(RACK1C_AT)RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C); nucleotide bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G63480DNA-binding family proteintext mining 24218605(yeast-2-hybrid)
AT5G43850(ARD4)ARD4; acireductone dioxygenase [iron(II)-requiring]/ metal ion bindingtext mining 21952135(yeast-2-hybrid)
AT5G03240(UBQ3)UBQ3 (POLYUBIQUITIN 3); protein bindingtext mining 23667124(Affinity Capture-MS)
AT3G18130(RACK1C_AT)RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C); nucleotide bindingtext mining 21952135(yeast-2-hybrid)
AT1G18080(ATARCA)ATARCA; nucleotide bindingtext mining 21952135(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT1G08200No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
ATHB1HD-ZIPLAT3G01470
SPL14SBPLAT1G20980
TGA1bZIPLAT5G65210