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AtPID

Arabidopsis thaliana Protein Interactome Database

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Query protein:PSB29  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT2G20890PSB29GSP:9 PPI:13PSB29.
Subcellar localization
plastid: Pubmed15516501;
Related organ
carpel      urea fraction,1-DE      Related article
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      triton fraction,Schagger 1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
cotyledon      SDS fraction,1-DE      Related article
cotyledon      soluble fraction,1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower      soluble fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
flower bud      soluble fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
juvenile leaf      soluble fraction,1-DE      Related article
root      soluble fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
seed      soluble fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      soluble fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
shoot      Phosphopeptide enriched fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchae; IMAC affinity chromatography ng      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT2G20890.1:PSB29; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: in 9 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II biogenesis protein Psp29 (InterPro:IPR017499); Has 275 Blast hits to 275 proteins in 74 species: Archae - 0; Bacteria - 116; Metazoa - 1; Fungi - 0; Plants - 36; Viruses - 6; Other Eukaryotes - 116 (source: NCBI BLink).

Related Mutant  
    M2380 Related gene:AT2G20890;
    Method:NULL
    Phenotype:variegated
    Related PO:seedling  PO:0008037    leaf  PO:0009025          
    Related Datasource Link:Chloroplast Function Database
    *

    Predicted Mutant Phenotypes
    seed    PO:0009010;    apical hook  PO:0000012;    fruit    PO:0009001;    plant embryo  PO:0009009;    rosette leaf    PO:0000014;    cotyledon  PO:0020030;    seedling    PO:0008037;    whole plant  PO:0000003;    chlorenchyma    PO:0005426;    
    Database cross-references
    TAIR Gene: AT2G20890;
    KEGG: AT2G20890;

    GSPannotationmethodsrelated
    AT1G35670(ATCDPK2)ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2); calmodulin-dependent protein kinase/ kinasetext mining 19130088(yeast-2-hybrid assay)
    AT4G09570(CPK4)CPK4; calmodulin-dependent protein kinase/ kinase/ protein kinasetext mining 19130088(yeast-2-hybrid assay)
    AT2G26300(GP_ALPHA_1)GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1); GTP binding / GTPase/ channel regulator/ signal transducertext mining 16582010(fluorescence resonance energy transfer (FRET)|Co-immunoprecipitation)
    AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
    AT5G19620(OEP80)OEP80 (OUTER ENVELOPE PROTEIN OF 80 KDA)text mining 16582010(Co-fractionation)
    AT2G26300(GP ALPHA 1)No related data.text mining 21952135(yeast-2-hybrid)
    AT1G35670(CDPK2)No related data.text mining 19130088(yeast-2-hybrid)
    AT4G09570(CPK4)CPK4; calmodulin-dependent protein kinase/ kinase/ protein kinasetext mining 19130088(yeast-2-hybrid)
    AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21952135(yeast-2-hybrid)

     

    Predicted
    Functional Partners
    annotationTotal
    AT2G28900No related data.
    AT5G52440No related data.
    AT3G46740No related data.
    AT5G03940No related data.

    O: Ortholog interaction datasets
    G: Shared biological function:Go Ontology
    E: Co-expression
    F: Gene fusion method
    N: Gene neighbors method
    P: Phylogenetic profile method
    D: Enriched domain pair
    What does the displayed number mean when your mouse moved over a certain icon?(LR)


    Transcriptional Regulation

    TFFamilyConfidenceDetails
    DREB1AAP2/EREBPLAT4G25480
    DREB1CAP2/EREBPLAT4G25470
    DREB2AAP2/EREBPLAT5G05410
    RAV1(2)AP2/EREBPLAT1G13260
    TGA1bZIPHAT5G65210

    Related PPIs for TFs
    TF1TF2PPI
    AT4G25480AT4G25470GO
    AT4G25480AT5G05410GO