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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:ROC3  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT2G16600ROC3GSP:7 PPI:33ROC3; peptidyl-prolyl cis-trans isomerase.
Subcellar localization
chloroplast    Based on Chloroplast Proteomics data;
Related organ
carpel      detergent fraction,1-DE      Related article
carpel      urea fraction,1-DE      Related article
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      triton fraction,Schagger 1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
cotyledon      SDS fraction,1-DE      Related article
cotyledon      soluble fraction,1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower      soluble fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
flower bud      soluble fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
juvenile leaf      soluble fraction,1-DE      Related article
pollen      combined fractions, 1-DE      Related article
pollen      soluble fraction, 1-DE      Related article
pollen      cyclohexane fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity enriched      Related article
pollen      total extract, ICAT labelling, avidin affinity flow through      Related article
root      soluble fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
seed      soluble fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      soluble fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
shoot      Phosphopeptide enriched fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchae; IMAC affinity chromatography ng      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT2G16600.1:ROC3; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, signal transduction; LOCATED IN: cytosol, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase (TAIR:AT2G21130.1); Has 11397 Blast hits to 11376 proteins in 1515 species: Archae - 82; Bacteria - 3600; Metazoa - 2407; Fungi - 955; Plants - 725; Viruses - 4; Other Eukaryotes - 3624 (source: NCBI BLink).

AT2G16600.2:ROC3; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, signal transduction; LOCATED IN: cytosol, chloroplast, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase (TAIR:AT2G21130.1); Has 8539 Blast hits to 8536 proteins in 1052 species: Archae - 62; Bacteria - 1775; Metazoa - 2392; Fungi - 915; Plants - 701; Viruses - 4; Other Eukaryotes - 2690 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT2G16600;
IPI: IPI00846679; IPI00520773;
UniParc: UPI0001505761; UPI00000AC8BE;
REFSEQ_PROVISIONAL: NP_001077901.1; NP_179251.1;
KEGG: AT2G16600;

GSPannotationmethodsrelated
AT3G06050(PRXIIF)PRXIIF (PEROXIREDOXIN IIF); antioxidant/ peroxidasetext mining 16778081(NULL)
AT5G56750Ndr family proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G26840(SUMO1)SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1); protein binding / protein tagtext mining 20813957(Affinity Capture-MS)
AT5G56750(NDL1)No related data.text mining 21952135(yeast-2-hybrid)
AT4G26630hypothetical proteintext mining 25387881(Affinity Capture-Western)
AT5G65430(GRF8)GRF8 (GENERAL REGULATORY FACTOR 8); protein binding / protein phosphorylated amino acid bindingtext mining 21094157(Affinity Capture-MS)
AT5G38480(GRF3)GRF3 (GENERAL REGULATORY FACTOR 3); ATP binding / protein binding / protein phosphorylated amino acid bindingtext mining 21094157(Affinity Capture-MS)

 

Predicted
Functional Partners
annotationTotal
AT4G38740No related data.
AT2G29960No related data.
AT2G38730peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative
AT5G67320No related data.
AT5G64350No related data.
AT5G58060No related data.
AT5G16270No related data.
AT5G08670ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism
AT4G23900nucleoside diphosphate kinase 4 (NDK4)
AT4G02450glycine-rich protein
AT3G43810No related data.
AT3G26618No related data.
AT3G10920No related data.
AT3G08710No related data.
AT3G08580No related data.
AT2G36530No related data.
AT2G28190No related data.
AT1G64520No related data.
AT1G27970No related data.
AT4G34870No related data.
AT1G01940peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein
AT2G36130peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative
AT3G56070No related data.
AT2G21130peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase
AT5G58710No related data.
AT1G66410No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
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Transcriptional Regulation

TFFamilyConfidenceDetails
AGL3MADSLAT2G03710
ATHB1HD-ZIPLAT3G01470
RAV1(2)AP2/EREBPLAT1G13260