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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:SEP4  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT2G03710SEP4GSP:20 PPI:23SEP4 (SEPALLATA 4); DNA binding / transcription factor.
Subcellar localization
nucleus: Pubmed16381842;
Representative Gene Model Description
AT2G03710.1:SEPALLATA 4 (SEP4); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SEP1 (SEPALLATA1); DNA binding / transcription factor (TAIR:AT5G15800.1); Has 5382 Blast hits to 5379 proteins in 697 species: Archae - 0; Bacteria - 4; Metazoa - 565; Fungi - 211; Plants - 4528; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).

AT2G03710.2:SEPALLATA 4 (SEP4); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SEP1 (SEPALLATA1); DNA binding / transcription factor (TAIR:AT5G15800.1); Has 5374 Blast hits to 5371 proteins in 700 species: Archae - 0; Bacteria - 4; Metazoa - 566; Fungi - 207; Plants - 4531; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).

AT2G03710.3:SEPALLATA 4 (SEP4); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SEP1 (SEPALLATA1); DNA binding / transcription factor (TAIR:AT5G15800.2); Has 5335 Blast hits to 5332 proteins in 692 species: Archae - 0; Bacteria - 0; Metazoa - 554; Fungi - 207; Plants - 4520; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).

Predicted Mutant Phenotypes
plant ovule    PO:0020003;    stamen  PO:0009029;    pedicel    PO:0009052;    petal  PO:0009032;    sepal    PO:0009031;    root apical meristem  PO:0020147;    
Database cross-references
TAIR Gene: AT2G03710;
IPI: IPI00527847; IPI00518345; IPI00517975;
UniParc: UPI00000A6ECF; UPI00001256C6; UPI00001B24E3;
REFSEQ_PROVISIONAL: NP_178466.1; NP_849930.1; NP_973411.1;
KEGG: AT2G03710;

GSPannotationmethodsrelated
AT5G60910(AGL8)AGL8 (agamous-like 8); transcription factortext mining 15805477(yeast-2-hybrid assay)
AT5G23260(TT16)TT16 (TRANSPARENT TESTA16); transcription factortext mining 16080001(yeast-2-hybrid assay)
AT2G45660(AGL20)AGL20 (AGAMOUS-LIKE 20); transcription factortext mining 15805477()
AT1G31630(AGL86)AGL86 (AGAMOUS-LIKE 86); DNA binding / transcription factortext mining 15805477()
AT1G48150MADS-box protein (AGL74 )text mining 15805477()
AT1G77980(AGL66)AGL66 (AGAMOUS-LIKE 66); transcription factortext mining 15805477()
AT3G12145(FLR1)FLR1; enzyme inhibitor/ transcription factor bindingtext mining 11689012(NULL)
AT1G46408(AGL97)AGL97 (AGAMOUS-LIKE 97); DNA binding / transcription factortext mining 15805477()
AT1G31640(AGL92)AGL92 (AGAMOUS-LIKE 92); DNA binding / transcription factortext mining 15805477()
AT1G69120(AP1)AP1 (APETALA1); DNA binding / protein binding / protein heterodimerization/ transcription activator/ transcription factortext mining 15805477(yeast-2-hybrid assay)
AT1G31640(AGL92)AGL92 (AGAMOUS-LIKE 92); DNA binding / transcription factortext mining 15805477(yeast-2-hybrid)
AT1G48150MADS-box protein (AGL74 )text mining 15805477(yeast-2-hybrid)
AT1G31630(AGL86)AGL86 (AGAMOUS-LIKE 86); DNA binding / transcription factortext mining 15805477(yeast-2-hybrid)
AT5G60910(AGL8)AGL8 (agamous-like 8); transcription factortext mining 15805477(yeast-2-hybrid)
AT5G23260(TT16)TT16 (TRANSPARENT TESTA16); transcription factortext mining 16080001(yeast-2-hybrid)
AT1G77980(AGL66)AGL66 (AGAMOUS-LIKE 66); transcription factortext mining 15805477(yeast-2-hybrid)
AT1G69120(AP1)AP1 (APETALA1); DNA binding / protein binding / protein heterodimerization/ transcription activator/ transcription factortext mining 15805477(yeast-2-hybrid)
AT5G23260(TT16)TT16 (TRANSPARENT TESTA16); transcription factortext mining 16080001(yeast-2-hybrid)
AT1G46408(AGL97)AGL97 (AGAMOUS-LIKE 97); DNA binding / transcription factortext mining 15805477(yeast-2-hybrid)
AT2G45660(AGL20)AGL20 (AGAMOUS-LIKE 20); transcription factortext mining 15805477(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT1G63630pentatricopeptide (PPR) repeat-containing protein
AT2G45660No related data.
AT5G62165No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

Transcription factorTarget geneDetail infoRelated Artical
SEPALLATA3[AT1G24260]AT2G03710No detail info. 19385720

 

TFFamilyConfidenceDetails
AGMADSLAT4G18960
AGL1MADSLAT3G58780
AGL15MADSLAT5G13790
ARR10GARPLAT4G31920
RAP2.2AP2/EREBPLAT3G14230
RAV1(2)AP2/EREBPLAT1G13260

Related PPIs for TFs
TF1TF2PPI
AT4G18960AT3G58780GO
AT4G18960AT5G13790GO
AT3G58780AT5G13790GO