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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:CDC48B  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT2G03670CDC48BGSP:16 PPI:21CDC48B; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding.
Subcellar localization
cell plate: Pubmed16381842; nucleus: Pubmed16381842;
Related organ
cell suspension culture      urea fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
Representative Gene Model Description
AT2G03670.1:CDC48B; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: cell division cycle protein 48, putative / CDC48, putative (TAIR:AT3G53230.1); Has 39617 Blast hits to 20656 proteins in 1767 species: Archae - 1242; Bacteria - 11248; Metazoa - 7279; Fungi - 4206; Plants - 3081; Viruses - 46; Other Eukaryotes - 12515 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT2G03670;
IPI: IPI00527776;
UniParc: UPI0000126C1F;
REFSEQ_PROVISIONAL: NP_178463.1;
KEGG: AT2G03670;

GSPannotationmethodsrelated
AT5G23120(HCF136)HCF136; protein bindingtext mining 12459468(NULL)
AT4G34460(AGB1)AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT2G18440(GUT15)unknowntext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT2G18860syntaxin family proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G18780(ACT2)ACT2 (ACTIN 2); structural constituent of cytoskeletontext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G60600(VAP)VAP (VESICLE ASSOCIATED PROTEIN); protein bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G16520(ATG8F)ATG8F (autophagy 8f); microtubule bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G1432030S ribosomal protein S13, chloroplast (CS13)text mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT2G18440(GUT15)unknowntext mining 21952135(yeast-2-hybrid)
AT3G60600(VAP)VAP (VESICLE ASSOCIATED PROTEIN); protein bindingtext mining 21952135(yeast-2-hybrid)
AT2G18860syntaxin family proteintext mining 21952135(yeast-2-hybrid)
AT3G18780(ACT2)ACT2 (ACTIN 2); structural constituent of cytoskeletontext mining 21952135(yeast-2-hybrid)
AT4G16520(ATG8F)ATG8F (autophagy 8f); microtubule bindingtext mining 21952135(yeast-2-hybrid)
AT4G34460(AGB1)AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein bindingtext mining 21952135(yeast-2-hybrid)
AT4G34460(AGB1)AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein bindingtext mining 21952135(yeast-2-hybrid)
AT5G1432030S ribosomal protein S13, chloroplast (CS13)text mining 21952135(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT3G13640No related data.
AT2G02980pentatricopeptide (PPR) repeat-containing protein
AT3G09840No related data.
AT5G03340cell division cycle protein 48, putative / CDC48, putative
AT3G53230cell division cycle protein 48, putative / CDC48, putative

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
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