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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AT1G79500  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT1G79500AT1G79500GSP:4 PPI:52-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA).
Subcellar localization
cytosol: Pubmed16381842;
Related organ
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      detergent fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cotyledon      soluble fraction,1-DE      Related article
flower      soluble fraction,1-DE      Related article
flower bud      soluble fraction,1-DE      Related article
juvenile leaf      soluble fraction,1-DE      Related article
pollen      soluble fraction, 1-DE      Related article
pollen      urea fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
root      soluble fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT1G79500.1:AtkdsA1; FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity; INVOLVED IN: rhamnogalacturonan II biosynthetic process, metabolic process; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218), Aldolase-type TIM barrel (InterPro:IPR013785), 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269); BEST Arabidopsis thaliana protein match is: ATKDSA2; 3-deoxy-8-phosphooctulonate synthase (TAIR:AT1G16340.3); Has 5591 Blast hits to 5591 proteins in 1105 species: Archae - 46; Bacteria - 2711; Metazoa - 4; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 2791 (source: NCBI BLink).

AT1G79500.2:AtkdsA1; FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity; INVOLVED IN: rhamnogalacturonan II biosynthetic process, metabolic process; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218), Aldolase-type TIM barrel (InterPro:IPR013785), 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269); BEST Arabidopsis thaliana protein match is: ATKDSA2; 3-deoxy-8-phosphooctulonate synthase (TAIR:AT1G16340.3); Has 5591 Blast hits to 5591 proteins in 1105 species: Archae - 46; Bacteria - 2711; Metazoa - 4; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 2791 (source: NCBI BLink).

AT1G79500.3:AtkdsA1; FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity; INVOLVED IN: rhamnogalacturonan II biosynthetic process, metabolic process; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218), Aldolase-type TIM barrel (InterPro:IPR013785), 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269); BEST Arabidopsis thaliana protein match is: ATKDSA2; 3-deoxy-8-phosphooctulonate synthase (TAIR:AT1G16340.3); Has 5591 Blast hits to 5591 proteins in 1105 species: Archae - 46; Bacteria - 2711; Metazoa - 4; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 2791 (source: NCBI BLink).

AT1G79500.4:AtkdsA1; FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity; INVOLVED IN: rhamnogalacturonan II biosynthetic process, metabolic process; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218), Aldolase-type TIM barrel (InterPro:IPR013785), 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269); BEST Arabidopsis thaliana protein match is: ATKDSA2; 3-deoxy-8-phosphooctulonate synthase (TAIR:AT1G16340.3); Has 5591 Blast hits to 5591 proteins in 1105 species: Archae - 46; Bacteria - 2711; Metazoa - 4; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 2791 (source: NCBI BLink).

AT1G79500.5:2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA); FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity; INVOLVED IN: rhamnogalacturonan II biosynthetic process, metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218), Aldolase-type TIM barrel (InterPro:IPR013785), 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269); BEST Arabidopsis thaliana protein match is: ATKDSA2; 3-deoxy-8-phosphooctulonate synthase (TAIR:AT1G16340.3).

Related Mutant  
    M4867 Related gene:AT1G79500;
    Method:RNAi
    Phenotype:NULL
    Related PO:whole plant  normal    
    Related Datasource Link:agrikola database
    *

    Predicted Mutant Phenotypes
    plant organ development stage    PO:0025339;    
    Database cross-references
    Entrez Gene: w;
    TAIR Gene: AT1G79500;
    IPI: w;
    UniProtKB/TrEMBL: w;
    UniParc: w;
    REFSEQ_PROVISIONAL: w;
    KEGG: AT1G79500;

    GSPannotationmethodsrelated
    AT4G34460(AGB1)AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
    AT4G17730(SYP23)SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
    AT4G34460(AGB1)AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein bindingtext mining 21952135(yeast-2-hybrid)
    AT4G17730(SYP23)SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptortext mining 21952135(yeast-2-hybrid)

     

    Predicted
    Functional Partners
    annotationTotal
    AT1G16340No related data.

    O: Ortholog interaction datasets
    G: Shared biological function:Go Ontology
    E: Co-expression
    F: Gene fusion method
    N: Gene neighbors method
    P: Phylogenetic profile method
    D: Enriched domain pair
    What does the displayed number mean when your mouse moved over a certain icon?(LR)


    Transcriptional Regulation

    TFFamilyConfidenceDetails
    RAV1(2)AP2/EREBPLAT1G13260
    TGA1bZIPLAT5G65210