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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AT1G67320  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT1G67320AT1G67320GSP:3 PPI:56DNA primase, large subunit family.
Related organ
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
Related complex
DNA polymerase alpha / primase complex
Representative Gene Model Description
AT1G67320.1:DNA primase, large subunit family; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer; LOCATED IN: alpha DNA polymerase:primase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, large subunit, eukaryotic (InterPro:IPR016558), DNA primase, large subunit, eukaryotic/archaeal (InterPro:IPR007238); Has 329 Blast hits to 325 proteins in 153 species: Archae - 6; Bacteria - 0; Metazoa - 133; Fungi - 93; Plants - 26; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).

Related KEGG pathway    
Genetic Information Processing
   |----------Replication and Repair
   |--------------------DNA replicationLink to keggView overall Pathway
Metabolic Pathways
   |----------Nucleotide Metabolism
   |--------------------Purine metabolismLink to keggView overall Pathway
   |--------------------Pyrimidine metabolismLink to keggView overall Pathway
Predicted Mutant Phenotypes
plant ovule    PO:0020003;    
Database cross-references
TAIR Gene: AT1G67320;
IPI: IPI00532737;
UniParc: UPI000005EC1B;
REFSEQ_PROVISIONAL: NP_564893.2;
KEGG: AT1G67320;

GSPannotationmethodsrelated
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21952135(yeast-2-hybrid)
AT5G03240(UBQ3)UBQ3 (POLYUBIQUITIN 3); protein bindingtext mining 18535787(Affinity Capture-MS)

 

Predicted
Functional Partners
annotationTotal
AT3G03110No related data.
AT1G67630No related data.
AT3G09660No related data.
AT4G02060No related data.
AT4G17760damaged DNA binding / exodeoxyribonuclease III
AT4G26720No related data.
AT4G26840No related data.
AT4G30600signal recognition particle receptor alpha subunit family protein
AT4G32720No related data.
AT4G35620No related data.
AT4G35740No related data.
AT5G06150No related data.
AT5G09550RAB GDP-dissociation inhibitor
AT5G10960CCR4-NOT transcription complex protein, putative
AT5G20850No related data.
AT5G25380No related data.
AT5G27740No related data.
AT5G40820No related data.
AT5G43080No related data.
AT5G46280DNA replication licensing factor, putative
AT5G49010No related data.
AT5G55160No related data.
AT5G63960No related data.
AT5G66100La domain-containing protein
AT5G66130No related data.
AT1G10930No related data.
AT1G13440No related data.
AT1G22300No related data.
AT1G26480No related data.
AT1G30270No related data.
AT1G31360No related data.
AT1G44900ATP binding / DNA binding / DNA-dependent ATPase
AT1G47210No related data.
AT1G60490No related data.
AT1G63160replication factor C 40 kDa, putative
AT1G77470replication factor C 36 kDA, putative
AT1G79930No related data.
AT1G80670transducin family protein / WD-40 repeat family protein
AT1G80780CCR4-NOT transcription complex protein, putative
AT2G06510No related data.
AT2G07690minichromosome maintenance family protein / MCM family protein
AT2G16440DNA replication licensing factor, putative
AT2G20980No related data.
AT2G24490No related data.
AT2G26980No related data.
AT2G30360No related data.
AT2G38130No related data.
AT3G02820zinc knuckle (CCHC-type) family protein
AT3G05040No related data.
AT3G06540GDP dissociation inhibitor family protein / Rab GTPase activator family protein
AT5G41880No related data.
AT5G67100No related data.
AT1G08260No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

Transcription factorTarget geneDetail infoRelated Artical
SEPALLATA3[AT1G24260]AT1G67320No detail info. 19385720
E2Fa[AT2G36010]AT1G67320 Relationship:Activation 16126853
Dpa[AT5G02470]AT1G67320 Relationship:Activation 16126853

 

TFFamilyConfidenceDetails
AGL1MADSLAT3G58780
AGL3MADSLAT2G03710
ATHB1HD-ZIPLAT3G01470
RAV1(2)AP2/EREBPLAT1G13260
TGA1bZIPHAT5G65210
WRKY6WRKY(Zn)LAT1G62300