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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AT1G56050  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT1G56050AT1G56050GSP:4 PPI:5GTP-binding protein-related.
Subcellar localization
plastid: Pubmed16207701;
Related organ
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      triton fraction,Schagger 1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cotyledon      SDS fraction,1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower bud      soluble fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
juvenile leaf      soluble fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
root      soluble fraction,1-DE      Related article
shoot      Flow through fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT1G56050.1:GTP-binding protein-related; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF933 (InterPro:IPR013029), TGS-like (InterPro:IPR012676), GTP1/OBG (InterPro:IPR006073), Conserved hypothetical protein CHP00092 (InterPro:IPR004396), GTP-binding protein, HSR1-related (InterPro:IPR002917), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: GTP binding (TAIR:AT1G30580.1); Has 12412 Blast hits to 12408 proteins in 1586 species: Archae - 237; Bacteria - 4992; Metazoa - 658; Fungi - 401; Plants - 151; Viruses - 0; Other Eukaryotes - 5973 (source: NCBI BLink).

Related Mutant  
    M2719 Related gene:AT1G56050; AT1G56060; AT1G56070;
    Method:T-DNA insertion
    Phenotype:General,files
    Related Datasource Link:Riken database

      M2725 Related gene:AT1G56040; AT1G56045; AT1G56050; AT1G56060;
      Method:T-DNA insertion
      Phenotype:General,files
      Related Datasource Link:Riken database

      M3138 Related gene:AT1G56050;
      Method:insertion site: 20967304,insertion site: 20967310
      Phenotype:embryo lethal (unconfirmed)
      Related PO:embryo  PO:0009009          
      Related Datasource Link:CSHL database
      *

      Database cross-references
      TAIR Gene: AT1G56050;
      KEGG: AT1G56050;

      GSPannotationmethodsrelated
      AT3G59220(PRN)PRN (PIRIN); calmodulin bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
      AT1G68185ubiquitin-relatedtext mining 20855607(yeast-2-hybrid)
      AT3G59220(PRN)PRN (PIRIN); calmodulin bindingtext mining 21952135(yeast-2-hybrid)
      AT3G57870(SCE1)SCE1 (SUMO CONJUGATION ENZYME 1); SUMO ligasetext mining 20855607(yeast-2-hybrid)

       

      Predicted
      Functional Partners
      annotationTotal
      AT1G30580GTP binding

      O: Ortholog interaction datasets
      G: Shared biological function:Go Ontology
      E: Co-expression
      F: Gene fusion method
      N: Gene neighbors method
      P: Phylogenetic profile method
      D: Enriched domain pair
      What does the displayed number mean when your mouse moved over a certain icon?(LR)


      Transcriptional Regulation

      TFFamilyConfidenceDetails
      AGL1MADSLAT3G58780
      ARR10GARPLAT4G31920
      RAV1(2)AP2/EREBPHAT1G13260
      TGA1bZIPHAT5G65210