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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AT1G55150  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT1G55150AT1G55150GSP:3 PPI:158DEAD box RNA helicase, putative (RH20).
Related organ
carpel      urea fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
Representative Gene Model Description
AT1G55150.1:DEAD box RNA helicase, putative (RH20); FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ethylene-responsive DEAD box RNA helicase, putative (RH30) (TAIR:AT5G63120.2); Has 30587 Blast hits to 29974 proteins in 1774 species: Archae - 607; Bacteria - 12473; Metazoa - 5312; Fungi - 3367; Plants - 1465; Viruses - 20; Other Eukaryotes - 7343 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT1G55150;
IPI: IPI00528901;
UniParc: UPI000009EF14;
REFSEQ_PROVISIONAL: NP_175911.1;
KEGG: AT1G55150;

GSPannotationmethodsrelated
AT4G17730(SYP23)SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G17730(SYP23)SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptortext mining 21952135(yeast-2-hybrid)
AT5G38480(GRF3)GRF3 (GENERAL REGULATORY FACTOR 3); ATP binding / protein binding / protein phosphorylated amino acid bindingtext mining 21094157(Affinity Capture-MS)

 

Predicted
Functional Partners
annotationTotal
AT3G02065DEAD/DEAH box helicase family protein
AT5G60990DEAD/DEAH box helicase, putative (RH10)
AT1G31970No related data.
AT1G06380ribosomal protein-related
AT5G41190hypothetical protein
AT5G40490RNA recognition motif (RRM)-containing protein
AT1G51380eukaryotic translation initiation factor 4A, putative / eIF-4A, putative
AT1G03280transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein
AT1G03530No related data.
AT1G07370No related data.
AT1G07770No related data.
AT1G09200histone H3
AT1G10490hypothetical protein
AT1G18630No related data.
AT1G22270hypothetical protein
AT1G25260acidic ribosomal protein P0-related
AT1G2688060S ribosomal protein L34 (RPL34A)
AT1G2691060S ribosomal protein L10 (RPL10B)
AT1G3312060S ribosomal protein L9 (RPL90B)
AT1G33140No related data.
AT1G33390helicase domain-containing protein
AT1G43170No related data.
AT1G48050No related data.
AT1G48410No related data.
AT1G48920No related data.
AT1G50480No related data.
AT1G50920GTP-binding protein-related
AT1G52930brix domain-containing protein
AT1G52980GTP-binding family protein
AT1G56110No related data.
AT1G60620No related data.
AT1G60900U2 snRNP auxiliary factor large subunit, putative
AT1G61580No related data.
AT1G66510AAR2 protein family
AT1G6658060S ribosomal protein L10 (RPL10C)
AT1G69620No related data.
AT1G7405060S ribosomal protein L6 (RPL6C)
AT1G75560zinc knuckle (CCHC-type) family protein
AT1G77030ATP binding / ATP-dependent helicase/ RNA binding / helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding
AT1G79000No related data.
AT1G80070No related data.
AT1G80680No related data.
AT2G02090No related data.
AT2G07690minichromosome maintenance family protein / MCM family protein
AT2G07750DEAD box RNA helicase, putative
AT2G0999040S ribosomal protein S16 (RPS16A)
AT2G13540No related data.
AT2G18020No related data.
AT2G18220hypothetical protein
AT2G18390No related data.
AT2G18510No related data.
AT2G20490No related data.
AT2G21440RNA recognition motif (RRM)-containing protein
AT2G24500No related data.
AT2G25355exonuclease-related
AT2G27960No related data.
AT2G29570No related data.
AT2G3161040S ribosomal protein S3 (RPS3A)
AT2G3222060S ribosomal protein L27 (RPL27A)
AT2G32600hydroxyproline-rich glycoprotein family protein
AT2G3448060S ribosomal protein L18A (RPL18aB)
AT2G3760060S ribosomal protein L36 (RPL36A)
AT2G37990ribosome biogenesis regulatory protein (RRS1) family protein
AT2G40700DEAD/DEAH box helicase, putative (RH17)
AT2G42740No related data.
AT2G44710RNA recognition motif (RRM)-containing protein
AT2G4761060S ribosomal protein L7A (RPL7aA)
AT3G01160hypothetical protein
AT3G0208040S ribosomal protein S19 (RPS19A)
AT3G03710No related data.
AT3G03920Gar1 RNA-binding region family protein
AT3G04770No related data.
AT3G05060SAR DNA-binding protein, putative
AT3G05590No related data.
AT3G0670060S ribosomal protein L29 (RPL29A)
AT3G07050GTP-binding family protein
AT3G08720No related data.
AT3G0963060S ribosomal protein L4/L1 (RPL4A)
AT3G13445No related data.
AT3G14010No related data.
AT3G15080exonuclease family protein
AT3G15460brix domain-containing protein
AT3G1608060S ribosomal protein L37 (RPL37C)
AT3G16810No related data.
AT3G18600DEAD/DEAH box helicase, putative
AT3G18610No related data.
AT3G22660rRNA processing protein-related
AT3G26560ATP-dependent RNA helicase, putative
AT3G27360histone H3
AT3G43590zinc knuckle (CCHC-type) family protein
AT3G43810No related data.
AT3G462103' exoribonuclease family domain 1-containing protein
AT3G4991060S ribosomal protein L26 (RPL26A)
AT3G50090exonuclease family protein
AT3G50670No related data.
AT3G55280No related data.
AT3G56150No related data.
AT3G56990No related data.
AT3G57000nucleolar essential protein-related
AT3G57150No related data.
AT3G5866060S ribosomal protein-related
AT3G58680No related data.
AT3G62310RNA helicase, putative
AT3G6287060S ribosomal protein L7A (RPL7aB)
AT3G63460WD-40 repeat family protein
AT4G1500060S ribosomal protein L27 (RPL27C)
AT4G19210No related data.
AT4G22380ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
AT4G25630No related data.
AT4G25880No related data.
AT4G28200hypothetical protein
AT4G30890No related data.
AT4G34910DEAD/DEAH box helicase, putative (RH16)
AT4G35800No related data.
AT4G38130No related data.
AT4G39520GTP-binding protein, putative
AT5G03455No related data.
AT5G04280glycine-rich RNA-binding protein
AT5G04600RNA recognition motif (RRM)-containing protein
AT5G08180ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
AT5G10270No related data.
AT5G10390histone H3
AT5G10400histone H3
AT5G10790No related data.
AT5G13850No related data.
AT5G14580polyribonucleotide nucleotidyltransferase, putative
AT5G1838040S ribosomal protein S16 (RPS16C)
AT5G19990No related data.
AT5G21040No related data.
AT5G25060RNA recognition motif (RRM)-containing protein
AT5G35330No related data.
AT5G359103'-5' exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein
AT5G37720RNA and export factor-binding protein, putative
AT5G39740No related data.
AT5G44200No related data.
AT5G46190KH domain-containing protein
AT5G46840RNA recognition motif (RRM)-containing protein
AT5G47010No related data.
AT5G50320No related data.
AT5G51300splicing factor-related
AT5G53770nucleotidyltransferase family protein
AT5G54910DEAD/DEAH box helicase, putative
AT5G55160No related data.
AT5G55310No related data.
AT5G57120hypothetical protein
AT5G5985040S ribosomal protein S15A (RPS15aF)
AT5G60410No related data.
AT5G61770No related data.
AT5G65360histone H3
AT5G65900DEAD/DEAH box helicase, putative
AT5G67320No related data.
AT5G67380No related data.
AT4G33370DEAD-box protein abstrakt, putative
AT5G02530RNA and export factor-binding protein, putative
AT5G51280DEAD-box protein abstrakt, putative

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
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