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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:UBP6  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT1G51710UBP6GSP:14 PPI:100UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6); calmodulin binding / ubiquitin-specific protease.
Related organ
carpel      urea fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      detergent fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      triton fraction,Schagger 1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
flower      soluble fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
flower bud      soluble fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
pollen      combined fractions, 1-DE      Related article
pollen      urea fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
root      soluble fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
Representative Gene Model Description
AT1G51710.1:UBIQUITIN-SPECIFIC PROTEASE 6 (UBP6); FUNCTIONS IN: ubiquitin-specific protease activity, calmodulin binding; INVOLVED IN: protein deubiquitination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7); ubiquitin thiolesterase/ ubiquitin-specific protease (TAIR:AT3G21280.1); Has 3669 Blast hits to 3406 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 2131; Fungi - 564; Plants - 354; Viruses - 2; Other Eukaryotes - 618 (source: NCBI BLink).

AT1G51710.2:UBIQUITIN-SPECIFIC PROTEASE 6 (UBP6); FUNCTIONS IN: ubiquitin-specific protease activity, calmodulin binding; INVOLVED IN: protein deubiquitination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7); ubiquitin thiolesterase/ ubiquitin-specific protease (TAIR:AT3G21280.1); Has 3690 Blast hits to 3424 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 2138; Fungi - 578; Plants - 356; Viruses - 2; Other Eukaryotes - 616 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT1G51710;
IPI: IPI00846270; IPI00519355;
UniParc: UPI0001505720; UPI000005EC16;
REFSEQ_PROVISIONAL: NP_001077698.1; NP_564596.1;
KEGG: AT1G51710;

GSPannotationmethodsrelated
AT2G27030(CAM5)CAM5 (CALMODULIN 5); calcium ion bindingtext mining 15987637(in vitro binding assay)
AT2G41110(CAM2)CAM2 (CALMODULIN 2); calcium ion binding / protein bindingtext mining 15987637(in vitro binding assay)
AT4G02570(ATCUL1)ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein bindingtext mining 15208391(NULL)
AT5G56750Ndr family proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT2G41110(CAM2)CAM2 (CALMODULIN 2); calcium ion binding / protein bindingtext mining 15987637(Protein-peptide)
AT5G56750(NDL1)No related data.text mining 21952135(yeast-2-hybrid)
AT5G04200(MC9)No related data.text mining 23964026(Biochemical Activity)
AT2G41110(CAM2)CAM2 (CALMODULIN 2); calcium ion binding / protein bindingtext mining 15987637(Reconstituted Complex)
AT5G03240(UBQ3)UBQ3 (POLYUBIQUITIN 3); protein bindingtext mining 23667124(Affinity Capture-MS)
AT3G11910No related data.EC
AT3G21280(UBP7)UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7); ubiquitin thiolesterase/ ubiquitin-specific proteaseEC
AT2G22310(ATUBP4)ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4); ubiquitin-specific proteaseEC
AT4G39910(ATUBP3)ATUBP3 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3); ubiquitin-specific proteaseEC
AT3G20630(UBP14)UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14); ubiquitin-specific proteaseEC

 

Predicted
Functional Partners
annotationTotal
AT5G58290No related data.
AT5G2354026S proteasome regulatory subunit, putative
AT1G47250No related data.
AT4G31300No related data.
AT4G29830No related data.
AT4G2482026S proteasome regulatory subunit, putative (RPN7)
AT4G1900626S proteasome regulatory subunit, putative (RPN9)
AT4G10590No related data.
AT3G60820No related data.
AT3G59810small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative
AT3G53090No related data.
AT3G49660transducin family protein / WD-40 repeat family protein
AT3G44530No related data.
AT3G43590zinc knuckle (CCHC-type) family protein
AT3G33520No related data.
AT3G26730zinc finger (C3HC4-type RING finger) family protein
AT3G2634020S proteasome beta subunit E, putative
AT3G24010No related data.
AT3G22630No related data.
AT3G22590RNA pol II accessory factor Cdc73 family protein
AT3G22480No related data.
AT5G59300No related data.
AT5G57990No related data.
AT5G52640No related data.
AT5G50870No related data.
AT5G41340No related data.
AT5G38110No related data.
AT5G37055No related data.
AT5G359103'-5' exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein
AT5G24360No related data.
AT5G2000026S proteasome AAA-ATPase subunit, putative
AT5G19910SOH1 family protein
AT5G14050transducin family protein / WD-40 repeat family protein
AT5G13680No related data.
AT5G10270No related data.
AT5G09920No related data.
AT5G09250No related data.
AT5G05780No related data.
AT5G05080No related data.
AT4G38630No related data.
AT4G38600No related data.
AT4G37280MRG family protein
AT2G03430ankyrin repeat family protein
AT2G02090No related data.
AT1G79880La domain-containing protein
AT1G7599026S proteasome regulatory subunit S3, putative (RPN3)
AT1G72175zinc finger (C3HC4-type RING finger) family protein
AT1G71230No related data.
AT1G70320No related data.
AT1G65650No related data.
AT1G64520No related data.
AT1G64230No related data.
AT1G61040No related data.
AT1G55250No related data.
AT1G53850No related data.
AT1G53750No related data.
AT1G52740No related data.
AT1G50030No related data.
AT1G49910WD-40 repeat family protein / mitotic checkpoint protein, putative
AT1G29150No related data.
AT1G24190No related data.
AT1G16890No related data.
AT1G16470No related data.
AT1G14400No related data.
AT3G20060No related data.
AT3G18430calcium-binding EF hand family protein
AT3G17205No related data.
AT3G12810No related data.
AT3G05530No related data.
AT3G05520F-actin capping protein alpha subunit family protein
AT3G05040No related data.
AT3G04780hypothetical protein
AT3G02540No related data.
AT2G47990No related data.
AT2G33770No related data.
AT2G32780No related data.
AT2G3273026S proteasome regulatory subunit, putative
AT2G32410No related data.
AT2G27020No related data.
AT2G26590adhesion regulating molecule family
AT2G26350No related data.
AT2G20580No related data.
AT2G2014026S protease regulatory complex subunit 4, putative
AT2G19560No related data.
AT3G21280No related data.
AT2G36170ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A)

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
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