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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:RACK1B_AT  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT1G48630RACK1B_ATGSP:9 PPI:24RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B); nucleotide binding.
Related organ
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      detergent fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
flower      soluble fraction,1-DE      Related article
pollen      soluble fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity enriched      Related article
root      SDS fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      soluble fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT1G48630.1:RECEPTOR FOR ACTIVATED C KINASE 1 B (RACK1B_AT); FUNCTIONS IN: nucleotide binding; INVOLVED IN: shoot development, root development; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C); nucleotide binding (TAIR:AT3G18130.1); Has 66160 Blast hits to 27679 proteins in 708 species: Archae - 62; Bacteria - 6756; Metazoa - 30431; Fungi - 13200; Plants - 6052; Viruses - 9; Other Eukaryotes - 9650 (source: NCBI BLink).

Related Mutant  
M2172 Related gene:AT1G48630;
Method:In rack1b-1 allele, the T-DNA was inserted in the second exon of RACK1B gene, and in the rack1b-2 allele, the T-DNA was inserted in the first intron ;In rack1c-1 allele, the T-DNA was inserted in the second exon of RACK1C gene, and in the rack1c-2 allele,???
Phenotype:Unlike rack1a mutants, rack1b mutants do not display any apparent developmental defects (Figure ?(Figure2C).2C).(PMID: 18947417)
Related Datasource Link:

M2175 Related gene:AT1G18080; AT1G48630;
Method:In rack1b-1 allele, the T-DNA was inserted in the second exon of RACK1B gene, and in the rack1b-2 allele, the T-DNA was inserted in the first intron ;In rack1c-1 allele, the T-DNA was inserted in the second exon of RACK1C gene, and in the rack1c-2 allele,???
Phenotype:We found that while rack1b-2 and rack1c-1 single mutants produced wild-type number of rosette leaves, both rack1b-2 and rack1c-1 significantly enhanced the phenotype of reduced number of rosette leaves of rack1a-1 single mutants (Figure 3A, B).Under these conditions, rack1a-1 rack1b-2 and rack1a-1 rack1c-1 double mutants only produced about 16 and 19 rosette leaves, respectively (Figure ?(Figure3B)(PMID: 18947417)
Related PO:rosette leaf  PO:0000014          
Related Datasource Link:

M2177 Related gene:AT1G18080; AT1G48630; AT3G18130;
Method:In rack1b-1 allele, the T-DNA was inserted in the second exon of RACK1B gene, and in the rack1b-2 allele, the T-DNA was inserted in the first intron ;In rack1c-1 allele, the T-DNA was inserted in the second exon of RACK1C gene, and in the rack1c-2 allele,???
Phenotype:Subsequently, we generated rack1a-1 rack1b-2 rack1c-1 triple mutant. Very few triple mutants could survive in soil. For those survived, they were extremely slow in growth and development, and produced fewest rosette leaves and smallest rosette size among all genotypes examined (Figure 3A芒鈧淒)(PMID: 18947417)
Related PO:rosette leaf  PO:0000014          
Related Datasource Link:

M2178 Related gene:AT1G48630; AT3G18130;
Method:In rack1b-1 allele, the T-DNA was inserted in the second exon of RACK1B gene, and in the rack1b-2 allele, the T-DNA was inserted in the first intron ;In rack1c-1 allele, the T-DNA was inserted in the second exon of RACK1C gene, and in the rack1c-2 allele,???
Phenotype:Interestingly, no synergistic effect was observed between rack1b-2 and rack1c-1 mutations. Statistically, rack1b-2 rack1c-1 double mutants phenocopied parental single mutants and displayed wild-type traits of these phenotypes (Figure 3A, B)(PMID: 18947417)
Related Datasource Link:
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Predicted Mutant Phenotypes
apical hook    PO:0000012;    
Database cross-references
TAIR Gene: AT1G48630;
KEGG: AT1G48630;

GSPannotationmethodsrelated
AT2G29080(ftsh3)ftsh3 (FtsH protease 3); ATP-dependent peptidase/ ATPasetext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G41990(WNK8)WNK8 (WITH NO LYSINE (K) KINASE 8); kinase/ protein kinasetext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G03240(UBQ3)UBQ3 (POLYUBIQUITIN 3); protein bindingtext mining 23667124(Affinity Capture-MS)
AT2G27100(SE)SE (SERRATE); DNA binding / transcription factortext mining 23941160(yeast-2-hybrid)
AT2G29080(ftsh3)ftsh3 (FtsH protease 3); ATP-dependent peptidase/ ATPasetext mining 21952135(yeast-2-hybrid)
AT5G43960nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteintext mining 21798944(yeast-2-hybrid)
AT5G48650nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteintext mining 21798944(yeast-2-hybrid)
AT5G41990(WNK8)WNK8 (WITH NO LYSINE (K) KINASE 8); kinase/ protein kinasetext mining 21952135(yeast-2-hybrid)
AT4G35470(PIRL4)No related data.text mining 21798944(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT3G18130No related data.
AT5G61240protein binding
AT3G06060short-chain dehydrogenase/reductase (SDR) family protein
AT3G59480pfkB-type carbohydrate kinase family protein
AT1G59960aldo/keto reductase, putative
AT4G27800protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1)
AT5G48180No related data.
AT1G07030mitochondrial substrate carrier family protein
AT4G32950protein phosphatase 2C, putative / PP2C, putative
AT4G38460No related data.
AT1G21780BTB/POZ domain-containing protein
AT1G18080No related data.
AT3G49660transducin family protein / WD-40 repeat family protein
AT2G26060No related data.
AT4G02730transducin family protein / WD-40 repeat family protein

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

Transcription factorTarget geneDetail infoRelated Artical
SEPALLATA3[AT1G24260]AT1G48630No detail info. 19385720

 

TFFamilyConfidenceDetails
AGL1MADSLAT3G58780
AGL3MADSLAT2G03710
ATHB5HD-ZIPHAT5G65310
RAV1(2)AP2/EREBPLAT1G13260
TGA1bZIPHAT5G65210