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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AT1G30230  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT1G30230AT1G30230GSP:6 PPI:72elongation factor 1-beta / EF-1-beta.
Subcellar localization
plasma membrane: Pubmed17317660;
Related organ
carpel      detergent fraction,1-DE      Related article
carpel      urea fraction,1-DE      Related article
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      detergent fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      triton fraction,Schagger 1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
cotyledon      SDS fraction,1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower      soluble fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
flower bud      soluble fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
juvenile leaf      soluble fraction,1-DE      Related article
pollen      combined fractions, 1-DE      Related article
pollen      soluble fraction, 1-DE      Related article
pollen      urea fraction, 1-DE      Related article
pollen      cyclohexane fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity flow through      Related article
root      soluble fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
seed      soluble fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      soluble fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
shoot      Phosphopeptide enriched fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Phosphopeptide enriched fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchae; IMAC affinity chromatography ng      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT1G30230.1:elongation factor 1-beta / EF-1-beta; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation, response to cadmium ion; LOCATED IN: plasma membrane, eukaryotic translation elongation factor 1 complex; EXPRESSED IN: guard cell, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Translation elongation factor EF1B, beta and delta chains, guanine nucleotide exchange (InterPro:IPR014038), Translation elongation factor EF1B, beta/delta chains, conserved site (InterPro:IPR001326); BEST Arabidopsis thaliana protein match is: elongation factor 1-beta, putative / EF-1-beta, putative (TAIR:AT2G18110.1); Has 758 Blast hits to 758 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 410; Fungi - 111; Plants - 109; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).

AT1G30230.2:elongation factor 1-beta / EF-1-beta; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: plasma membrane, eukaryotic translation elongation factor 1 complex; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Translation elongation factor EF1B, beta and delta chains, guanine nucleotide exchange (InterPro:IPR014038), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Translation elongation factor EF1B, beta/delta chains, conserved site (InterPro:IPR001326); BEST Arabidopsis thaliana protein match is: elongation factor 1-beta, putative / EF-1-beta, putative (TAIR:AT2G18110.1); Has 758 Blast hits to 758 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 410; Fungi - 111; Plants - 109; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).

Predicted Mutant Phenotypes
apical hook    PO:0000012;    plant cell  PO:0009002;    
Database cross-references
TAIR Gene: AT1G30230;
IPI: IPI00846758; IPI00531026;
UniParc: UPI0001505693; UPI0000129C2F;
REFSEQ_PROVISIONAL: NP_001077627.1; NP_174314.2;
KEGG: AT1G30230;

GSPannotationmethodsrelated
AT4G17730(SYP23)SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT2G26400(ATARD3)ATARD3 (ACIREDUCTONE DIOXYGENASE 3); acireductone dioxygenase [iron(II)-requiring]/ heteroglycan binding / metal ion bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G65210(TGA1)TGA1; DNA binding / calmodulin binding / transcription factortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G65210(TGA1)TGA1; DNA binding / calmodulin binding / transcription factortext mining 21952135(yeast-2-hybrid)
AT2G26400(ARD3)No related data.text mining 21952135(yeast-2-hybrid)
AT4G17730(SYP23)SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptortext mining 21952135(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT1G07940elongation factor 1-alpha / EF-1-alpha
AT1G07920elongation factor 1-alpha / EF-1-alpha
AT3G44530No related data.
AT3G46100No related data.
AT3G53110No related data.
AT3G54540No related data.
AT3G55040No related data.
AT3G59410protein kinase family protein
AT4G01370No related data.
AT4G13780methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative
AT4G17510No related data.
AT4G26840No related data.
AT4G30890No related data.
AT4G37910No related data.
AT5G02790In2-1 protein, putative
AT5G13850No related data.
AT5G16630No related data.
AT5G17290No related data.
AT5G22800No related data.
AT5G23290No related data.
AT5G359103'-5' exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein
AT5G36880acetyl-CoA synthetase, putative / acetate-CoA ligase, putative
AT5G41210No related data.
AT5G42020No related data.
AT5G53770nucleotidyltransferase family protein
AT5G54840No related data.
AT5G55300No related data.
AT5G55310No related data.
AT5G56030No related data.
AT5G60790No related data.
AT5G67270No related data.
AT2G03870small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative
AT2G02390No related data.
AT1G79090hypothetical protein
AT1G75560zinc knuckle (CCHC-type) family protein
AT1G64550No related data.
AT1G57720elongation factor 1B-gamma, putative / eEF-1B gamma, putative
AT1G54270No related data.
AT1G52740No related data.
AT1G50200No related data.
AT1G36310methyltransferase
AT1G29880glycyl-tRNA synthetase / glycine--tRNA ligase
AT1G24190No related data.
AT1G14610No related data.
AT1G13950No related data.
AT1G12920No related data.
AT1G09640elongation factor 1B-gamma, putative / eEF-1B gamma, putative
AT1G01960No related data.
AT3G33520No related data.
AT3G26618No related data.
AT3G16640No related data.
AT3G14080small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative
AT3G12580No related data.
AT3G12530No related data.
AT3G12110No related data.
AT3G11710No related data.
AT3G02540No related data.
AT2G44680No related data.
AT2G39740hypothetical protein
AT2G38810No related data.
AT2G29570No related data.
AT2G23070casein kinase II alpha chain, putative
AT2G19560No related data.
AT5G12110elongation factor 1B alpha-subunit 1 (eEF1Balpha1)
AT2G18110elongation factor 1-beta, putative / EF-1-beta, putative
AT5G19510elongation factor 1B alpha-subunit 2 (eEF1Balpha2)

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
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