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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:CAB2  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT1G29920CAB2GSP:12 PPI:13CAB2 (CHLOROPHYLL A/B-BINDING PROTEIN 2); chlorophyll binding.
Subcellar localization
plastid: Pubmed16381842;
Related organ
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT1G29920.1:CHLOROPHYLL A/B-BINDING PROTEIN 2 (CAB2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: light-harvesting complex, thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast; EXPRESSED IN: 13 plant structures; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3); chlorophyll binding (TAIR:AT1G29910.1); Has 1799 Blast hits to 1721 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1555; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).

Phosphorylation info: Phosphoprotein with evidence,detail info please click the following link
Related KEGG pathway    
Metabolic Pathways
   |----------Energy Metabolism
   |--------------------Photosynthesis - antenna proteinsLink to keggView overall Pathway
Database cross-references
TAIR Gene: AT1G29920;
REFSEQ_PROVISIONAL: NP_564340.1;
KEGG: AT1G29920;

GSPannotationmethodsrelated
AT1G74890(ARR15)ARR15 (RESPONSE REGULATOR 15); transcription regulator/ two-component response regulatortext mining 18642946(yeast-2-hybrid assay)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G44880(ACD1)ACD1 (ACCELERATED CELL DEATH 1); iron-sulfur cluster binding / pheophorbide a oxygenasetext mining 22366162(Affinity Capture-Western)
AT2G47450(CAO)CAO (CHAOS); chromatin bindingtext mining 23519468(Reconstituted Complex)
AT5G13800(PPH)No related data.text mining 22366162(Affinity Capture-Western)
AT4G37000(ACD2)ACD2 (ACCELERATED CELL DEATH 2); red chlorophyll catabolite reductasetext mining 22366162(Affinity Capture-Western)
AT5G04900(NOL)No related data.text mining 22366162(Affinity Capture-Western)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21952135(yeast-2-hybrid)
AT4G13250(NYC1)No related data.text mining 22366162(Affinity Capture-Western)
AT4G22920(NYE1)NYE1 (NON-YELLOWING 1)text mining 22366162(Affinity Capture-Western)
AT1G44575(NPQ4)NPQ4 (NONPHOTOCHEMICAL QUENCHING); chlorophyll binding / xanthophyll bindingtext mining 23509270(Reconstituted Complex)
AT1G74890(ARR15)ARR15 (RESPONSE REGULATOR 15); transcription regulator/ two-component response regulatortext mining 18642946(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT1G29930No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
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