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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AT1G27890  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT1G27890AT1G27890GSP:2 PPI:3CCR4-NOT transcription complex protein, putative.
Related organ
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT1G27890.1:CCR4-NOT transcription complex protein, putative; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: CCR4-NOT transcription complex protein, putative (TAIR:AT1G27820.1); Has 609 Blast hits to 608 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 215; Fungi - 91; Plants - 207; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).

Phosphorylation info: Phosphoprotein with evidence,detail info please click the following link
Database cross-references
TAIR Gene: AT1G27890;
IPI: IPI00532627;
UniParc: UPI00000AA370;
REFSEQ_PROVISIONAL: NP_174110.1;
KEGG: AT1G27890;

GSPannotationmethodsrelated
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21952135(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT1G61470CCR4-NOT transcription complex protein, putative

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
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