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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:HMGB3  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT1G20696HMGB3GSP:3 PPI:42HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor.
Related organ
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cotyledon      SDS fraction,1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
Representative Gene Model Description
AT1G20696.1:HIGH MOBILITY GROUP B 3 (HMGB3); FUNCTIONS IN: chromatin binding, transcription factor activity, structural constituent of chromatin, DNA binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor (TAIR:AT1G20693.3); Has 4841 Blast hits to 4168 proteins in 434 species: Archae - 0; Bacteria - 0; Metazoa - 3716; Fungi - 308; Plants - 361; Viruses - 4; Other Eukaryotes - 452 (source: NCBI BLink).

AT1G20696.2:HIGH MOBILITY GROUP B 3 (HMGB3); FUNCTIONS IN: chromatin binding, transcription factor activity, structural constituent of chromatin, DNA binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor (TAIR:AT1G20693.3); Has 4188 Blast hits to 3563 proteins in 392 species: Archae - 0; Bacteria - 0; Metazoa - 3265; Fungi - 252; Plants - 323; Viruses - 0; Other Eukaryotes - 348 (source: NCBI BLink).

AT1G20696.3:HIGH MOBILITY GROUP B 3 (HMGB3); FUNCTIONS IN: chromatin binding, transcription factor activity, structural constituent of chromatin, DNA binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor (TAIR:AT1G20693.3); Has 4640 Blast hits to 3977 proteins in 429 species: Archae - 0; Bacteria - 0; Metazoa - 3618; Fungi - 279; Plants - 344; Viruses - 0; Other Eukaryotes - 399 (source: NCBI BLink).

Phosphorylation info: Phosphoprotein with evidence,detail info please click the following link
Database cross-references
TAIR Gene: AT1G20696;
IPI: IPI00846349; IPI00656681; IPI00548667;
UniParc: UPI00015054BF; UPI00005DBF4A; UPI000005EC77;
REFSEQ_PROVISIONAL: NP_001077570.1; NP_564124.1; NP_001031075.1;
KEGG: AT1G20696;

GSPannotationmethodsrelated
AT5G56750Ndr family proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
-(RAD23A)No related data.text mining 19292762(Reconstituted Complex)
AT5G56750(NDL1)No related data.text mining 21952135(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT3G44530No related data.
AT3G45980No related data.
AT3G49660transducin family protein / WD-40 repeat family protein
AT3G54560No related data.
AT4G08350No related data.
AT4G10710No related data.
AT4G28510No related data.
AT4G35800No related data.
AT5G1838040S ribosomal protein S16 (RPS16C)
AT5G22110No related data.
AT5G23710DNA binding / DNA-directed RNA polymerase
AT5G38110No related data.
AT5G42020No related data.
AT5G4876060S ribosomal protein L13A (RPL13aD)
AT5G50320No related data.
AT5G51940No related data.
AT5G55260No related data.
AT5G55310No related data.
AT5G59910No related data.
AT1G06760histone H1, putative
AT1G08700presenilin family protein
AT1G13180No related data.
AT1G16710No related data.
AT1G51060No related data.
AT1G55520No related data.
AT1G65440No related data.
AT1G75840No related data.
AT2G07690minichromosome maintenance family protein / MCM family protein
AT2G13540No related data.
AT2G21790No related data.
AT2G23070casein kinase II alpha chain, putative
AT2G37560No related data.
AT2G38560No related data.
AT2G41630No related data.
AT2G47420dimethyladenosine transferase, putative
AT3G06400No related data.
AT3G12390nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative
AT3G23890No related data.
AT3G28730No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

Transcription factorTarget geneDetail infoRelated Artical
GCN5[AT3G54610]AT1G20696No detail info. 18644002
HY5[AT5G11260]AT1G20696No detail info. 18644002

 

TFFamilyConfidenceDetails
ARR10GARPLAT4G31920
ATHB1HD-ZIPHAT3G01470
RAV1(2)AP2/EREBPHAT1G13260
SPL14SBPLAT1G20980