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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:PAB1  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT1G16470PAB1GSP:4 PPI:113PAB1 (PROTEASOME SUBUNIT PAB1); endopeptidase/ peptidase/ threonine-type endopeptidase.
Subcellar localization
chloroplast    Based on Chloroplast Proteomics data;
Related organ
cell suspension culture      soluble fraction,1-DE      Related article
cotyledon      soluble fraction,1-DE      Related article
pollen      urea total extract, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity flow through      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
silique      soluble fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
Representative Gene Model Description
AT1G16470.1:PROTEASOME SUBUNIT PAB1 (PAB1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, cytosolic ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome alpha-subunit, conserved site (InterPro:IPR000426), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome alpha subunit B, putative (TAIR:AT1G79210.3); Has 4901 Blast hits to 4900 proteins in 370 species: Archae - 503; Bacteria - 35; Metazoa - 1915; Fungi - 1037; Plants - 574; Viruses - 0; Other Eukaryotes - 837 (source: NCBI BLink).

AT1G16470.2:PROTEASOME SUBUNIT PAB1 (PAB1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, cytosolic ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome alpha-subunit, conserved site (InterPro:IPR000426), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome alpha subunit B, putative (TAIR:AT1G79210.3); Has 4901 Blast hits to 4900 proteins in 370 species: Archae - 503; Bacteria - 35; Metazoa - 1915; Fungi - 1037; Plants - 574; Viruses - 0; Other Eukaryotes - 837 (source: NCBI BLink).

Related KEGG pathway    
Genetic Information Processing
   |----------Folding, Sorting and Degradation
   |--------------------ProteasomeLink to keggView overall Pathway
Database cross-references
TAIR Gene: AT1G16470;
IPI: IPI00524498; IPI00520209;
UniParc: UPI00000AC413; UPI0000001452;
REFSEQ_PROVISIONAL: NP_173096.1; NP_001031057.1;
KEGG: AT1G16470;

GSPannotationmethodsrelated
AT5G56750Ndr family proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G29040(RPT2a)RPT2a (regulatory particle AAA-ATPase 2a); ATPasetext mining 24846764(Affinity Capture-MS)
AT5G56750(NDL1)No related data.text mining 21952135(yeast-2-hybrid)
AT5G03240(UBQ3)UBQ3 (POLYUBIQUITIN 3); protein bindingtext mining 19429840(Affinity Capture-MS)

 

Predicted
Functional Partners
annotationTotal
AT2G05840No related data.
AT5G40580No related data.
AT5G12410THUMP domain-containing protein
AT1G14980No related data.
AT3G51260No related data.
AT3G05530No related data.
AT5G42790No related data.
AT3G27430No related data.
AT4G38630No related data.
AT5G66140No related data.
AT1G4500026S proteasome regulatory complex subunit p42D, putative
AT1G7921020S proteasome alpha subunit B, putative
AT3G14290No related data.
AT2G27020No related data.
AT1G21720No related data.
AT5G35590No related data.
AT3G22110No related data.
AT1G47250No related data.
AT1G0481026S proteasome regulatory subunit, putative
AT1G10390nucleoporin family protein
AT1G10430No related data.
AT1G11980No related data.
AT1G13030sphere organelles protein-related
AT1G13060No related data.
AT1G15440transducin family protein / WD-40 repeat family protein
AT1G16190DNA repair protein RAD23, putative
AT1G18080No related data.
AT1G20200No related data.
AT1G22300No related data.
AT1G25490No related data.
AT1G26830No related data.
AT1G29150No related data.
AT1G29990No related data.
AT1G32380ribose-phosphate pyrophosphokinase 2 / phosphoribosyl diphosphate synthetase 2 (PRS2)
AT1G51710No related data.
AT1G53750No related data.
AT1G59830No related data.
AT1G64520No related data.
AT1G65650No related data.
AT1G69670No related data.
AT1G7599026S proteasome regulatory subunit S3, putative (RPN3)
AT1G76040No related data.
AT1G80680No related data.
AT2G02560No related data.
AT2G17190ubiquitin family protein
AT2G2014026S protease regulatory complex subunit 4, putative
AT2G20560DNAJ heat shock family protein
AT2G20580No related data.
AT2G26590adhesion regulating molecule family
AT2G28840ankyrin repeat family protein
AT2G3273026S proteasome regulatory subunit, putative
AT2G33340nucleotide binding / ubiquitin-protein ligase
AT2G35390ribose-phosphate pyrophosphokinase 1 / phosphoribosyl diphosphate synthetase 1 (PRSI)
AT2G39990No related data.
AT2G41860No related data.
AT2G42500No related data.
AT2G44950No related data.
AT3G02540No related data.
AT3G04740No related data.
AT3G11270No related data.
AT3G11830chaperonin, putative
AT3G11910No related data.
AT3G12580No related data.
AT3G13235ubiquitin family protein
AT3G17205No related data.
AT3G17820No related data.
AT3G21280No related data.
AT3G22630No related data.
AT3G25230No related data.
AT3G25800No related data.
AT3G2634020S proteasome beta subunit E, putative
AT3G27960kinesin light chain-related
AT3G53230cell division cycle protein 48, putative / CDC48, putative
AT3G53970proteasome inhibitor-related
AT4G02570No related data.
AT4G04910No related data.
AT4G14800No related data.
AT4G1900626S proteasome regulatory subunit, putative (RPN9)
AT4G2482026S proteasome regulatory subunit, putative (RPN7)
AT4G27640importin beta-2 subunit family protein
AT4G29510No related data.
AT4G30890No related data.
AT4G34910DEAD/DEAH box helicase, putative (RH16)
AT5G03340cell division cycle protein 48, putative / CDC48, putative
AT5G05780No related data.
AT5G06600No related data.
AT5G11900eukaryotic translation initiation factor SUI1 family protein
AT5G17290No related data.
AT5G19820No related data.
AT5G19990No related data.
AT5G2000026S proteasome AAA-ATPase subunit, putative
AT5G20570No related data.
AT5G21040No related data.
AT5G22980No related data.
AT5G2354026S proteasome regulatory subunit, putative
AT5G26360chaperonin, putative
AT5G38650proteasome maturation factor UMP1 family protein
AT5G42020No related data.
AT5G42190No related data.
AT5G42970No related data.
AT5G43010No related data.
AT5G52640No related data.
AT5G56030No related data.
ATMG01190No related data.
AT1G53850No related data.
AT3G60820No related data.
AT1G56450No related data.
AT4G31300No related data.
AT1G77440No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
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