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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:RAV1  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT1G13260RAV1GSP:5 PPI:5RAV1; DNA binding / transcription factor/ transcription repressor.
Subcellar localization
nucleus: Pubmed16381842;
Representative Gene Model Description
AT1G13260.1:RAV1; FUNCTIONS IN: transcription repressor activity, transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Transcriptional factor B3 (InterPro:IPR003340), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT3G25730.1); Has 3785 Blast hits to 3621 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3768; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT1G13260;
IPI: IPI00544013;
UniParc: UPI000013314B;
REFSEQ_PROVISIONAL: NP_172784.1;
KEGG: AT1G13260;

GSPannotationmethodsrelated
AT3G16830(TPR2)TPR2 (TOPLESS-RELATED 2)text mining 22065421(yeast-2-hybrid)
AT3G15880(WSIP2)protein bindingtext mining 22065421(yeast-2-hybrid)
AT5G27030(TPR3)TPR3 (TOPLESS-RELATED 3)text mining 22065421(yeast-2-hybrid)
AT1G15750(TPL)TPL (TOPLESS); protein binding / protein homodimerization/ transcription repressortext mining 22065421(yeast-2-hybrid)
AT5G19000(BPM1)No related data.text mining 23792371(yeast-2-hybrid)

 


Transcriptional Regulation

Transcription factorTarget geneDetail infoRelated Artical
SEPALLATA3[AT1G24260]AT1G13260No detail info. 19385720
HY5[AT5G11260]AT1G13260 Relationship:Repressed Detected Organs:Cotyledon 17337630

 

TFFamilyConfidenceDetails
AGL15MADSLAT5G13790
AGL2MADSLAT5G15800
AGL3MADSLAT2G03710
ARR10GARPLAT4G31920
ATHB1HD-ZIPHAT3G01470
CDC5MYBLAT1G09770