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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:XBCP3  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT1G09850XBCP3GSP:2 PPI:4XBCP3 (xylem bark cysteine peptidase 3); cysteine-type endopeptidase/ cysteine-type peptidase.
Subcellar localization
vacuole: Pubmed15539469;
Related organ
flower      SDS fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
pollen      urea fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity enriched      Related article
root      soluble fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
Representative Gene Model Description
AT1G09850.1:xylem bark cysteine peptidase 3 (XBCP3); FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Granulin (InterPro:IPR000118), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: cysteine proteinase, putative / thiol protease, putative (TAIR:AT5G43060.1); Has 6952 Blast hits to 6272 proteins in 598 species: Archae - 29; Bacteria - 122; Metazoa - 3609; Fungi - 4; Plants - 1229; Viruses - 118; Other Eukaryotes - 1841 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT1G09850;
IPI: IPI00536687;
UniParc: UPI0000162CF4;
REFSEQ_PROVISIONAL: NP_563855.1;
KEGG: AT1G09850;

GSPannotationmethodsrelated
AT4G34460(AGB1)AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G34460(AGB1)AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein bindingtext mining 21952135(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT3G19390cysteine proteinase, putative / thiol protease, putative
AT1G47128No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

Transcription factorTarget geneDetail infoRelated Artical
SEPALLATA3[AT1G24260]AT1G09850No detail info. 19385720
HY5 [AT5G11260]AT1G09850 Relationship:Induced Detected Organs:Hypocotyl 17337630

 

TFFamilyConfidenceDetails
ARR10GARPLAT4G31920
ATHB1HD-ZIPLAT3G01470
RAV1(2)AP2/EREBPHAT1G13260