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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:ATCDC5  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT1G09770ATCDC5GSP:5 PPI:18ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5); DNA binding / transcription factor.
Subcellar localization
plastid: Pubmed15028209; nucleus: Pubmed12444417;
Related organ
carpel      urea fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      detergent fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cotyledon      SDS fraction,1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
shoot      Phosphopeptide enriched fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Phosphopeptide enriched fraction: SDS total extract of A. thaliana shoots; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
Representative Gene Model Description
AT1G09770.1:ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5 (ATCDC5); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: defense response signaling pathway, resistance gene-independent, defense response signaling pathway, resistance gene-dependent, defense response to fungus, defense response to bacterium, regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB3R-5 (MYB DOMAIN PROTEIN 3R-5); DNA binding / transcription factor (TAIR:AT5G02320.1); Has 10151 Blast hits to 8135 proteins in 531 species: Archae - 9; Bacteria - 249; Metazoa - 3171; Fungi - 645; Plants - 3006; Viruses - 8; Other Eukaryotes - 3063 (source: NCBI BLink).

Phosphorylation info: Phosphoprotein with evidence,detail info please click the following link
Related Mutant  
M4009 Related gene:AT1G09770;
Method:T-DNA Insertion_Mutant,mutation site Exon 4
Phenotype:Embryo Defective,Preglobular
Related PO:embryo  PO:0009009          
Related Datasource Link:SeedGenes Database
*

Database cross-references
TAIR Gene: AT1G09770;
KEGG: AT1G09770;

GSPannotationmethodsrelated
AT3G18165(MOS4)MOS4 (Modifier of snc1,4)text mining 17575050(Co-immunoprecipitation)
AT3G18165(MOS4)MOS4 (Modifier of snc1,4)text mining 17575050(*TAIR)
AT3G11820(SYP121)SYP121 (SYNTAXIN OF PLANTS 121); SNAP receptor/ protein anchortext mining 24556609(Affinity Capture-MS)
AT1G07360zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing proteintext mining 20943852(Affinity Capture-Western)
AT1G04510(MAC3A)No related data.text mining 19629177(Affinity Capture-Western)

 

Predicted
Functional Partners
annotationTotal
AT5G46280DNA replication licensing factor, putative
AT2G07690minichromosome maintenance family protein / MCM family protein
AT4G15900No related data.
AT5G47790forkhead-associated domain-containing protein / FHA domain-containing protein
AT3G20010SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein
AT1G80070No related data.
AT3G26560ATP-dependent RNA helicase, putative
AT3G07590small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative
AT5G28740transcription-coupled DNA repair protein-related
AT1G20960No related data.
AT3G62310RNA helicase, putative
AT5G41770crooked neck protein, putative / cell cycle protein, putative
AT3G18165No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
ARR1GARP/ARR-BLAT3G16857
ATHB1HD-ZIPLAT3G01470
GATA-1C2C2(Zn) GATALAT3G24050
RAV1(2)AP2/EREBPLAT1G13260