Home Contact Sitemap

AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:VAP27-2  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT1G08820VAP27-2GSP:10 PPI:68VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2); structural molecule.
Subcellar localization
plasma membrane: Pubmed17317660; endoplasmic reticulum: Pubmed11907339;
Related organ
carpel      urea fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      triton fraction,Schagger 1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
pollen      urea fraction, 1-DE      Related article
root      SDS fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
Representative Gene Model Description
AT1G08820.1:VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2 (VAP27-2); FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular transport; LOCATED IN: plasma membrane, endoplasmic reticulum membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535); BEST Arabidopsis thaliana protein match is: VAP (VESICLE ASSOCIATED PROTEIN); protein binding (TAIR:AT3G60600.3); Has 794 Blast hits to 773 proteins in 160 species: Archae - 0; Bacteria - 17; Metazoa - 379; Fungi - 109; Plants - 229; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).

AT1G08820.2:VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2 (VAP27-2); FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular transport; LOCATED IN: plasma membrane, endoplasmic reticulum membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535); BEST Arabidopsis thaliana protein match is: VAP (VESICLE ASSOCIATED PROTEIN); protein binding (TAIR:AT3G60600.3); Has 794 Blast hits to 773 proteins in 160 species: Archae - 0; Bacteria - 17; Metazoa - 379; Fungi - 109; Plants - 229; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).

Phosphorylation info: Phosphoprotein with evidence,detail info please click the following link
Database cross-references
TAIR Gene: AT1G08820;
IPI: IPI00529050;
UniParc: UPI0000196BB9;
REFSEQ_PROVISIONAL: NP_172359.2; NP_001031004.1;
KEGG: AT1G08820;

GSPannotationmethodsrelated
AT4G34460(AGB1)AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G59220(PRN)PRN (PIRIN); calmodulin bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G43850(ARD4)ARD4; acireductone dioxygenase [iron(II)-requiring]/ metal ion bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G34460(AGB1)AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein bindingtext mining 21952135(yeast-2-hybrid)
AT1G29060hypothetical proteintext mining 24833385(PCA)
AT4G20790leucine-rich repeat family proteintext mining 24833385(PCA)
AT5G43850(ARD4)ARD4; acireductone dioxygenase [iron(II)-requiring]/ metal ion bindingtext mining 21952135(yeast-2-hybrid)
AT3G12180cornichon family proteintext mining 24833385(PCA)
AT3G59220(PRN)PRN (PIRIN); calmodulin bindingtext mining 21952135(yeast-2-hybrid)
AT5G49540hypothetical proteintext mining 24833385(PCA)

 

Predicted
Functional Partners
annotationTotal
AT4G26840No related data.
AT4G27180No related data.
AT4G27640importin beta-2 subunit family protein
AT4G31120No related data.
AT4G38630No related data.
AT4G39800No related data.
AT5G05010clathrin adaptor complexes medium subunit-related
AT5G08080No related data.
AT5G10260No related data.
AT5G22130No related data.
AT5G22830No related data.
AT5G22840protein kinase family protein
AT5G24940protein phosphatase 2C, putative / PP2C, putative
AT5G40820No related data.
AT5G42000ORMDL family protein
AT5G45600No related data.
AT5G46030hypothetical protein
AT5G48810No related data.
AT5G52640No related data.
AT5G53460No related data.
AT5G56030No related data.
AT5G57240No related data.
AT5G58060No related data.
AT5G60460sec61beta family protein
AT5G61550protein kinase family protein
AT5G66020No related data.
AT5G66100La domain-containing protein
AT5G66680No related data.
ATMG01080No related data.
AT1G01230ORMDL family protein
AT1G01910anion-transporting ATPase, putative
AT1G07810No related data.
AT1G11890No related data.
AT1G12920No related data.
AT1G13560No related data.
AT1G16560Per1-like family protein
AT1G59820No related data.
AT1G76030vacuolar ATP synthase subunit B / V-ATPase B subunit / vacuolar proton pump B subunit / V-ATPase 57 kDa subunit
AT2G01770No related data.
AT2G02370hypothetical protein
AT2G06530No related data.
AT2G34770No related data.
AT2G37540short-chain dehydrogenase/reductase (SDR) family protein
AT2G45200No related data.
AT2G46520cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative
AT3G03800No related data.
AT3G06460GNS1/SUR4 membrane family protein
AT3G14270phosphatidylinositol-4-phosphate 5-kinase family protein
AT3G24350No related data.
AT3G48750No related data.
AT3G55380No related data.
AT3G57870No related data.
AT3G59520No related data.
AT3G60840No related data.
AT4G04910No related data.
AT4G15780No related data.
AT4G22540No related data.
AT4G26550hypothetical protein

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)