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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AT1G04480  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT1G04480AT1G04480GSP:4 PPI:20060S ribosomal protein L23 (RPL23A).
Related organ
pollen      combined fractions, 1-DE      Related article
pollen      soluble fraction, 1-DE      Related article
pollen      urea fraction, 1-DE      Related article
pollen      cyclohexane fraction, 1-DE      Related article
pollen      detergent fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity enriched      Related article
shoot      Phosphopeptide enriched fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchae; IMAC affinity chromatography ng      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT1G04480.1:60S ribosomal protein L23 (RPL23A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14b/L23e (InterPro:IPR000218); BEST Arabidopsis thaliana protein match is: emb2171 (embryo defective 2171); structural constituent of ribosome (TAIR:AT3G04400.1); Has 6297 Blast hits to 6297 proteins in 1833 species: Archae - 236; Bacteria - 2977; Metazoa - 280; Fungi - 176; Plants - 586; Viruses - 0; Other Eukaryotes - 2042 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT1G04480;
IPI: IPI00524788;
REFSEQ_PROVISIONAL: NP_563707.1;
KEGG: AT1G04480;

GSPannotationmethodsrelated
AT4G17730(SYP23)SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G03240(UBQ3)UBQ3 (POLYUBIQUITIN 3); protein bindingtext mining 23667124(Affinity Capture-MS)
AT4G17730(SYP23)SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptortext mining 21952135(yeast-2-hybrid)
AT5G46630clathrin adaptor complexes medium subunit family proteintext mining 23975897(Affinity Capture-MS)

 

Predicted
Functional Partners
annotationTotal
AT1G29900No related data.
AT3G04400No related data.
AT2G18220hypothetical protein
AT3G16810No related data.
AT4G15770RNA binding / protein binding
AT2G44510p21Cip1-binding protein-related
AT1G55520No related data.
AT1G0110060S acidic ribosomal protein P1 (RPP1A)
AT1G07745No related data.
AT1G0959060S ribosomal protein L21 (RPL21A)
AT1G0969060S ribosomal protein L21 (RPL21C)
AT1G11400No related data.
AT1G11980No related data.
AT1G14030ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative
AT1G16740ribosomal protein L20 family protein
AT1G17370No related data.
AT1G17720No related data.
AT1G22270hypothetical protein
AT1G23290No related data.
AT1G23820No related data.
AT1G25260acidic ribosomal protein P0-related
AT1G2688060S ribosomal protein L34 (RPL34A)
AT1G2691060S ribosomal protein L10 (RPL10B)
AT1G2740060S ribosomal protein L17 (RPL17A)
AT1G29320transducin family protein / WD-40 repeat family protein
AT1G3312060S ribosomal protein L9 (RPL90B)
AT1G33140No related data.
AT1G3624060S ribosomal protein L30 (RPL30A)
AT1G45332mitochondrial elongation factor, putative
AT1G48900signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C)
AT1G50030No related data.
AT1G50920GTP-binding protein-related
AT1G5230060S ribosomal protein L37 (RPL37B)
AT1G55860No related data.
AT1G56070No related data.
AT1G56110No related data.
AT1G5766060S ribosomal protein L21 (RPL21E)
AT1G5786060S ribosomal protein L21
AT1G60170No related data.
AT1G64550No related data.
AT1G6658060S ribosomal protein L10 (RPL10C)
AT1G6743060S ribosomal protein L17 (RPL17B)
AT1G69620No related data.
AT1G70600structural constituent of ribosome
AT1G72370No related data.
AT1G7405060S ribosomal protein L6 (RPL6C)
AT1G7427060S ribosomal protein L35a (RPL35aC)
AT1G75560zinc knuckle (CCHC-type) family protein
AT1G7794060S ribosomal protein L30 (RPL30B)
AT1G79880La domain-containing protein
AT1G79930No related data.
AT2G01770No related data.
AT2G16960importin beta-2 subunit family protein
AT2G17190ubiquitin family protein
AT2G18020No related data.
AT2G1975040S ribosomal protein S30 (RPS30A)
AT2G20060ribosomal protein L4 family protein
AT2G2045060S ribosomal protein L14 (RPL14A)
AT2G22425peptidase
AT2G2521060S ribosomal protein L39 (RPL39A)
AT2G27530No related data.
AT2G2771060S acidic ribosomal protein P2 (RPP2B)
AT2G28560No related data.
AT2G3206040S ribosomal protein S12 (RPS12C)
AT2G3222060S ribosomal protein L27 (RPL27A)
AT2G3337060S ribosomal protein L23 (RPL23B)
AT2G3448060S ribosomal protein L18A (RPL18aB)
AT2G36620No related data.
AT2G3760060S ribosomal protein L36 (RPL36A)
AT2G3939060S ribosomal protein L35 (RPL35B)
AT2G42740No related data.
AT2G4346060S ribosomal protein L38 (RPL38A)
AT2G4412060S ribosomal protein L7 (RPL7C)
AT2G4486060S ribosomal protein L24, putative
AT2G45280No related data.
AT2G4761060S ribosomal protein L7A (RPL7aA)
AT3G01790ribosomal protein L13 family protein
AT3G01800ribosome recycling factor family protein / ribosome releasing factor family protein
AT3G0219060S ribosomal protein L39 (RPL39B)
AT3G02530chaperonin, putative
AT3G02540No related data.
AT3G0492040S ribosomal protein S24 (RPS24A)
AT3G05060SAR DNA-binding protein, putative
AT3G0556060S ribosomal protein L22-2 (RPL22B)
AT3G05590No related data.
AT3G0668060S ribosomal protein L29 (RPL29B)
AT3G0670060S ribosomal protein L29 (RPL29A)
AT3G0920060S acidic ribosomal protein P0 (RPP0B)
AT3G0963060S ribosomal protein L4/L1 (RPL4A)
AT3G1125060S acidic ribosomal protein P0 (RPP0C)
AT3G11940No related data.
AT3G12110No related data.
AT3G12580No related data.
AT3G13230RNA binding
AT3G13445No related data.
AT3G1358060S ribosomal protein L7 (RPL7D)
AT3G15460brix domain-containing protein
AT3G1608060S ribosomal protein L37 (RPL37C)
AT3G16100No related data.
AT3G1678060S ribosomal protein L19 (RPL19B)
AT3G17465No related data.
AT3G18600DEAD/DEAH box helicase, putative
AT3G19170No related data.
AT3G20390endoribonuclease L-PSP family protein
AT3G21280No related data.
AT3G2339060S ribosomal protein L36a/L44 (RPL36aA)
AT3G23620brix domain-containing protein
AT3G24090glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase
AT3G2483060S ribosomal protein L13A (RPL13aB)
AT3G26560ATP-dependent RNA helicase, putative
AT3G43590zinc knuckle (CCHC-type) family protein
AT3G4459060S acidic ribosomal protein P2 (RPP2D)
AT3G49010No related data.
AT3G4991060S ribosomal protein L26 (RPL26A)
AT3G53020No related data.
AT3G54210ribosomal protein L17 family protein
AT3G5517060S ribosomal protein L35 (RPL35C)
AT3G55280No related data.
AT3G55620No related data.
AT3G5866060S ribosomal protein-related
AT3G5870060S ribosomal protein L11 (RPL11B)
AT3G5954060S ribosomal protein L38 (RPL38B)
AT3G6024560S ribosomal protein L37a (RPL37aC)
AT4G0223060S ribosomal protein L19 (RPL19C)
AT4G02450glycine-rich protein
AT4G03240No related data.
AT4G09140No related data.
AT4G11600No related data.
AT4G1317060S ribosomal protein L13A (RPL13aC)
AT4G1432060S ribosomal protein L36a/L44 (RPL36aB)
AT4G1672060S ribosomal protein L15 (RPL15A)
AT4G1739060S ribosomal protein L15 (RPL15B)
AT4G1810060S ribosomal protein L32 (RPL32A)
AT4G18730No related data.
AT4G19210No related data.
AT4G22380ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
AT4G2623060S ribosomal protein L31 (RPL31B)
AT4G2709060S ribosomal protein L14 (RPL14B)
AT4G27640importin beta-2 subunit family protein
AT4G27650No related data.
AT4G2939040S ribosomal protein S30 (RPS30B)
AT4G30600signal recognition particle receptor alpha subunit family protein
AT4G30890No related data.
AT4G31700No related data.
AT4G3198560S ribosomal protein L39 (RPL39C)
AT4G32360NADP adrenodoxin-like ferredoxin reductase
AT4G32720No related data.
AT4G35490No related data.
AT4G36020No related data.
AT4G3613060S ribosomal protein L8 (RPL8C)
AT4G36420ribosomal protein L12 family protein
AT4G36480No related data.
AT4G37910No related data.
AT4G38630No related data.
AT5G0261060S ribosomal protein L35 (RPL35D)
AT5G04600RNA recognition motif (RRM)-containing protein
AT5G08180ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
AT5G08420RNA binding
AT5G09590No related data.
AT5G09650No related data.
AT5G1432030S ribosomal protein S13, chloroplast (CS13)
AT5G19820No related data.
AT5G20850No related data.
AT5G2244060S ribosomal protein L10A (RPL10aC)
AT5G23535KOW domain-containing protein
AT5G2390060S ribosomal protein L13 (RPL13D)
AT5G26360chaperonin, putative
AT5G2785060S ribosomal protein L18 (RPL18C)
AT5G39740No related data.
AT5G42020No related data.
AT5G4577560S ribosomal protein L11 (RPL11D)
AT5G4643060S ribosomal protein L32 (RPL32B)
AT5G4770060S acidic ribosomal protein P1 (RPP1C)
AT5G4876060S ribosomal protein L13A (RPL13aD)
AT5G49930No related data.
AT5G52640No related data.
AT5G53460No related data.
AT5G53770nucleotidyltransferase family protein
AT5G54910DEAD/DEAH box helicase, putative
AT5G56030No related data.
AT5G5667040S ribosomal protein S30 (RPS30C)
AT5G57450No related data.
AT5G64520No related data.
AT5G64650ribosomal protein L17 family protein
AT5G64670ribosomal protein L15 family protein
AT5G65900DEAD/DEAH box helicase, putative
AT5G66100La domain-containing protein
ATCG00160No related data.
ATCG00790No related data.
ATCG00830No related data.
ATCG01310No related data.
AT1G43170No related data.
AT3G25520No related data.
AT1G52930brix domain-containing protein
AT5G14520pescadillo-related
AT1G61580No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
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Transcriptional Regulation

TFFamilyConfidenceDetails
AGL3MADSLAT2G03710
RAV1(2)AP2/EREBPLAT1G13260
TGA1bZIPLAT5G65210