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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:RPS15  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT1G04270RPS15GSP:6 PPI:108RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15); structural constituent of ribosome.
Subcellar localization
vacuole: Pubmed17151019; plasma membrane: Pubmed17317660; cytosol: Pubmed16381842;
Related organ
carpel      detergent fraction,1-DE      Related article
carpel      urea fraction,1-DE      Related article
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
pollen      combined fractions, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
seed      soluble fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      soluble fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchae; IMAC affinity chromatography ng      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT1G04270.1:CYTOSOLIC RIBOSOMAL PROTEIN S15 (RPS15); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15, eukaryotic/archaeal (InterPro:IPR005713), Ribosomal protein S19/S15 (InterPro:IPR002222); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S15 (RPS15D) (TAIR:AT5G09510.1); Has 5180 Blast hits to 5180 proteins in 1501 species: Archae - 179; Bacteria - 2245; Metazoa - 207; Fungi - 151; Plants - 555; Viruses - 0; Other Eukaryotes - 1843 (source: NCBI BLink).

AT1G04270.2:CYTOSOLIC RIBOSOMAL PROTEIN S15 (RPS15); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15, eukaryotic/archaeal (InterPro:IPR005713), Ribosomal protein S19/S15 (InterPro:IPR002222); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S15 (RPS15D) (TAIR:AT5G09510.1); Has 5435 Blast hits to 5435 proteins in 1600 species: Archae - 179; Bacteria - 2449; Metazoa - 207; Fungi - 153; Plants - 562; Viruses - 0; Other Eukaryotes - 1885 (source: NCBI BLink).

Related KEGG pathway    
Genetic Information Processing
   |----------Translation
   |--------------------RibosomeLink to keggView overall Pathway
Related Mutant  
    M2601 Related gene:AT3G07350; AT1G04260; AT1G04270; AT1G04280; AT1G02080;
    Method:T-DNA insertion
    Phenotype:Branching,internode|Branching,inflorescence|General,files
    Related PO:shoot  PO:0009006    shoot internode  PO:0005005    shoot  PO:0009006    inflorescence branch  PO:0009081          
    Related Datasource Link:Riken database
    *

    Database cross-references
    TAIR Gene: AT1G04270;
    KEGG: AT1G04270;

    GSPannotationmethodsrelated
    AT4G17730(SYP23)SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
    AT4G29040(RPT2a)RPT2a (regulatory particle AAA-ATPase 2a); ATPasetext mining 24846764(Affinity Capture-MS)
    AT1G76500(SOB3)SOB3 (SUPPRESSOR OF PHYB-4#3); DNA bindingtext mining 24218605(yeast-2-hybrid)
    AT5G03240(UBQ3)UBQ3 (POLYUBIQUITIN 3); protein bindingtext mining 23667124(Affinity Capture-MS)
    AT4G17730(SYP23)SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptortext mining 21952135(yeast-2-hybrid)
    AT3G24350(SYP32)SYP32 (SYNTAXIN OF PLANTS 32); SNAP receptortext mining 24556609(Affinity Capture-MS)

     

    Predicted
    Functional Partners
    annotationTotal
    AT5G4364040S ribosomal protein S15 (RPS15E)
    AT5G0949040S ribosomal protein S15 (RPS15B)
    AT1G22780No related data.
    AT5G0951040S ribosomal protein S15 (RPS15D)
    AT1G07770No related data.
    AT1G13950No related data.
    AT1G23290No related data.
    AT1G25260acidic ribosomal protein P0-related
    AT1G3312060S ribosomal protein L9 (RPL90B)
    AT1G33140No related data.
    AT1G45332mitochondrial elongation factor, putative
    AT1G4883040S ribosomal protein S7 (RPS7A)
    AT1G54270No related data.
    AT1G54290eukaryotic translation initiation factor SUI1, putative
    AT1G56070No related data.
    AT1G60620No related data.
    AT1G61580No related data.
    AT1G62850translation release factor
    AT1G64600copper ion binding / methyltransferase
    AT1G6743060S ribosomal protein L17 (RPL17B)
    AT1G70600structural constituent of ribosome
    AT1G71230No related data.
    AT1G72370No related data.
    AT1G7405060S ribosomal protein L6 (RPL6C)
    AT2G0522040S ribosomal protein S17 (RPS17B)
    AT2G0999040S ribosomal protein S16 (RPS16A)
    AT2G17190ubiquitin family protein
    AT2G18020No related data.
    AT2G3161040S ribosomal protein S3 (RPS3A)
    AT2G3222060S ribosomal protein L27 (RPL27A)
    AT2G3448060S ribosomal protein L18A (RPL18aB)
    AT2G42740No related data.
    AT2G47420dimethyladenosine transferase, putative
    AT2G4761060S ribosomal protein L7A (RPL7aA)
    AT2G47990No related data.
    AT3G01800ribosome recycling factor family protein / ribosome releasing factor family protein
    AT3G0208040S ribosomal protein S19 (RPS19A)
    AT3G02540No related data.
    AT3G0492040S ribosomal protein S24 (RPS24A)
    AT3G0920060S acidic ribosomal protein P0 (RPP0B)
    AT3G10920No related data.
    AT3G1125060S acidic ribosomal protein P0 (RPP0C)
    AT3G17465No related data.
    AT3G18130No related data.
    AT3G19760eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative
    AT3G2339060S ribosomal protein L36a/L44 (RPL36aA)
    AT3G4398040S ribosomal protein S29 (RPS29A)
    AT3G4401040S ribosomal protein S29 (RPS29B)
    AT3G4503040S ribosomal protein S20 (RPS20A)
    AT3G46040No related data.
    AT3G4991060S ribosomal protein L26 (RPL26A)
    AT3G5258040S ribosomal protein S14 (RPS14C)
    AT3G5389040S ribosomal protein S21 (RPS21B)
    AT3G55280No related data.
    AT3G5634040S ribosomal protein S26 (RPS26C)
    AT3G57660No related data.
    AT4G00100No related data.
    AT4G0223060S ribosomal protein L19 (RPL19C)
    AT4G09800No related data.
    AT4G1432060S ribosomal protein L36a/L44 (RPL36aB)
    AT4G16630DEAD/DEAH box helicase, putative (RH28)
    AT4G1739060S ribosomal protein L15 (RPL15B)
    AT4G1810060S ribosomal protein L32 (RPL32A)
    AT4G20360No related data.
    AT4G22380ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
    AT4G2574040S ribosomal protein S10 (RPS10A)
    AT4G2623060S ribosomal protein L31 (RPL31B)
    AT4G31700No related data.
    AT4G3386540S ribosomal protein S29 (RPS29C)
    AT4G3455540S ribosomal protein S25, putative
    AT4G3467040S ribosomal protein S3A (RPS3aB)
    AT4G35800No related data.
    AT5G0261060S ribosomal protein L35 (RPL35D)
    AT5G0296040S ribosomal protein S23 (RPS23B)
    AT5G06360ribosomal protein S8e family protein
    AT5G08180ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
    AT5G11200DEAD/DEAH box helicase, putative
    AT5G11900eukaryotic translation initiation factor SUI1 family protein
    AT5G14520pescadillo-related
    AT5G14580polyribonucleotide nucleotidyltransferase, putative
    AT5G1520040S ribosomal protein S9 (RPS9B)
    AT5G15750RNA-binding S4 domain-containing protein
    AT5G2029040S ribosomal protein S8 (RPS8A)
    AT5G4793040S ribosomal protein S27 (RPS27D)
    AT5G53770nucleotidyltransferase family protein
    AT5G56940ribosomal protein S16 family protein
    AT5G5842040S ribosomal protein S4 (RPS4D)
    AT5G5985040S ribosomal protein S15A (RPS15aF)
    AT5G60640No related data.
    AT5G6230040S ribosomal protein S20 (RPS20C)
    AT5G64140No related data.
    AT5G64670ribosomal protein L15 family protein
    ATCG00160No related data.
    ATCG00330No related data.
    ATCG00830No related data.
    ATCG00900No related data.
    ATCG01240No related data.
    ATCG01310No related data.
    ATMG00980No related data.
    AT1G3403040S ribosomal protein S18 (RPS18B)
    AT5G6307040S ribosomal protein S15, putative
    AT5G0950040S ribosomal protein S15 (RPS15C)

    O: Ortholog interaction datasets
    G: Shared biological function:Go Ontology
    E: Co-expression
    F: Gene fusion method
    N: Gene neighbors method
    P: Phylogenetic profile method
    D: Enriched domain pair
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    Transcriptional Regulation

    TFFamilyConfidenceDetails
    TGA1bZIPLAT5G65210
    WRKY18WRKY(Zn)LAT4G31800