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Arabidopsis thaliana Protein Interactome Database

Pair Search Results


Query protein:SHP1-SEP1Network Display
Gold Standard Positiverelated
Method: text mining 15805477()
LocusSymbolNumber of interactionsAnnotation
AT3G58780SHP1GSP:28 PPI:30See DetailSHP1 (SHATTERPROOF 1); DNA binding / protein binding / transcription factor.
Subcellar localization
nucleus: Pubmed16381842;
Representative Gene Model Description
AT3G58780.1:SHATTERPROOF 1 (SHP1); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: fruit dehiscence, ovule development, carpel development; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SHP2 (SHATTERPROOF 2); protein binding / transcription factor (TAIR:AT2G42830.1); Has 5287 Blast hits to 5283 proteins in 695 species: Archae - 0; Bacteria - 0; Metazoa - 570; Fungi - 209; Plants - 4453; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).

AT3G58780.2:SHATTERPROOF 1 (SHP1); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: fruit dehiscence, ovule development, carpel development; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SHP2 (SHATTERPROOF 2); protein binding / transcription factor (TAIR:AT2G42830.1); Has 5241 Blast hits to 5238 proteins in 691 species: Archae - 0; Bacteria - 0; Metazoa - 554; Fungi - 209; Plants - 4422; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).

Related Mutant  
M4993 Related gene:AT4G09960; AT3G58780; AT2G42830;
Method:NULL
Phenotype:However, from stage 12, the ovule integuments began to present defects (cf. Figures 1C and 1G), and some of them clearly switched to a different developmental program and developed into wide carpel-like structures (Figure 1H). The majority of the mature ovules showed various defects in integument development (Figure 1I).(PMID: 17693535)
Related PO:ovule  PO:0020003          
Related Datasource Link:
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Database cross-references
TAIR Gene: AT3G58780;
IPI: IPI00846428; IPI00540117;
UniParc: UPI0000D5BCD2; UPI0000E68724;
REFSEQ: NP_001078311.1; NP_191437.1;
KEGG: AT3G58780;
LocusSymbolNumber of interactionsAnnotation
AT5G15800SEP1GSP:42 PPI:42See DetailSEP1 (SEPALLATA1); DNA binding / transcription factor.
Subcellar localization
nucleus: Pubmed16381842;
Representative Gene Model Description
AT5G15800.1:SEPALLATA1 (SEP1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: flower development, ovule development; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SEP2 (SEPALLATA 2); DNA binding / protein binding / transcription factor (TAIR:AT3G02310.1); Has 5430 Blast hits to 5427 proteins in 700 species: Archae - 3; Bacteria - 0; Metazoa - 554; Fungi - 207; Plants - 4612; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).

AT5G15800.2:SEPALLATA1 (SEP1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: flower development, ovule development; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SEP2 (SEPALLATA 2); DNA binding / protein binding / transcription factor (TAIR:AT3G02310.1); Has 5430 Blast hits to 5427 proteins in 700 species: Archae - 3; Bacteria - 0; Metazoa - 554; Fungi - 207; Plants - 4612; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT5G15800;
IPI: IPI00891534; IPI00541035;
UniParc: UPI000016DB10; UPI0000004205;
REFSEQ: NP_568322.1; NP_001119230.1;
KEGG: AT5G15800;