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Arabidopsis thaliana Protein Interactome Database

Pair Search Results


Query protein:AT5G64140-SYP23Network Display
Gold Standard Positiverelated
Method: text mining 21036873(yeast-2-hybrid assay:FDS1176001)
LocusSymbolNumber of interactionsAnnotation
AT5G64140RPS28GSP:2 PPI:73See DetailRPS28 (RIBOSOMAL PROTEIN S28); structural constituent of ribosome.
Subcellar localization
cytosol: Pubmed16381842;
Related complex
Ribosome, archaea
Ribosome, eukaryotes
Representative Gene Model Description
AT5G64140.1:RIBOSOMAL PROTEIN S28 (RPS28); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S28e (InterPro:IPR000289); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S28 (RPS28B) (TAIR:AT5G03850.1); Has 802 Blast hits to 802 proteins in 280 species: Archae - 145; Bacteria - 0; Metazoa - 260; Fungi - 104; Plants - 121; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).

Related KEGG pathway    
Genetic Information Processing
   |----------Translation
   |--------------------RibosomeLink to keggView overall Pathway
Database cross-references
TAIR Gene: AT5G64140;
IPI: IPI00522792;
UniParc: UPI0000000E47;
REFSEQ: NP_201219.1;
KEGG: AT5G64140;
LocusSymbolNumber of interactionsAnnotation
AT4G17730SYP23GSP:114 PPI:115See DetailSYP23 (SYNTAXIN OF PLANTS 23); SNAP receptor.
Subcellar localization
vacuole: Pubmed17151019;
Representative Gene Model Description
AT4G17730.1:SYNTAXIN OF PLANTS 23 (SYP23); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), t-SNARE (InterPro:IPR010989), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: VAM3; SNAP receptor (TAIR:AT5G46860.1); Has 1274 Blast hits to 1274 proteins in 179 species: Archae - 0; Bacteria - 2; Metazoa - 694; Fungi - 185; Plants - 254; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).

AT4G17730.2:SYNTAXIN OF PLANTS 23 (SYP23); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: VAM3; SNAP receptor (TAIR:AT5G46860.1); Has 1307 Blast hits to 1307 proteins in 179 species: Archae - 0; Bacteria - 2; Metazoa - 713; Fungi - 192; Plants - 254; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).

Related KEGG pathway    
Regulatory Pathways
   |----------Folding, Sorting and Degradation
   |--------------------SNARE interactions in vesicular transportLink to keggView overall Pathway
Database cross-references
TAIR Gene: AT4G17730;
IPI: IPI00846179; IPI00527367;
UniParc: UPI000150557B; UPI00001362DF;
REFSEQ: NP_001078403.1; NP_567537.1;
KEGG: AT4G17730;

query fail :Table 'shiyan_test.at_domain' doesn't exist