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Arabidopsis thaliana Protein Interactome Database

Pair Search Results


Query protein:AT5G64140-AT5G08180Network Display
Predicted Functional Partner
Total likelihood ratio:200
LocusSymbolNumber of interactionsAnnotation
AT5G64140RPS28GSP:2 PPI:73See DetailRPS28 (RIBOSOMAL PROTEIN S28); structural constituent of ribosome.
Subcellar localization
cytosol: Pubmed16381842;
Related complex
Ribosome, archaea
Ribosome, eukaryotes
Representative Gene Model Description
AT5G64140.1:RIBOSOMAL PROTEIN S28 (RPS28); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S28e (InterPro:IPR000289); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S28 (RPS28B) (TAIR:AT5G03850.1); Has 802 Blast hits to 802 proteins in 280 species: Archae - 145; Bacteria - 0; Metazoa - 260; Fungi - 104; Plants - 121; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).

Related KEGG pathway    
Genetic Information Processing
   |----------Translation
   |--------------------RibosomeLink to keggView overall Pathway
Database cross-references
TAIR Gene: AT5G64140;
IPI: IPI00522792;
UniParc: UPI0000000E47;
REFSEQ: NP_201219.1;
KEGG: AT5G64140;
LocusSymbolNumber of interactionsAnnotation
AT5G08180AT5G08180GSP:0 PPI:245See Detailribosomal protein L7Ae/L30e/S12e/Gadd45 family protein.
Subcellar localization
nucleus: Pubmed12444417;
Representative Gene Model Description
AT5G08180.1:ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group-like nuclear protein (InterPro:IPR002415), Ribosomal protein L7A/RS6 family (InterPro:IPR018492), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038), Ribosomal protein L7Ae conserved site (InterPro:IPR004037); BEST Arabidopsis thaliana protein match is: ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT5G20160.1); Has 1570 Blast hits to 1570 proteins in 296 species: Archae - 226; Bacteria - 0; Metazoa - 560; Fungi - 291; Plants - 151; Viruses - 0; Other Eukaryotes - 342 (source: NCBI BLink).

Phosphorylation info: Phosphoprotein with evidence,detail info please click the following link
Database cross-references
TAIR Gene: AT5G08180;
IPI: IPI00539022;
UniParc: UPI000009EF51;
REFSEQ: NP_196435.1;
KEGG: AT5G08180;

query fail :Table 'shiyan_test.at_domain' doesn't exist