Home Contact Sitemap

WWW.AtPID.ORG

Arabidopsis thaliana Protein Interactome Database

Pair Search Results


Query protein:AT5G64140-AT5G03850Network Display
Predicted Functional Partner
Total likelihood ratio:9142.92
LocusSymbolNumber of interactionsAnnotation
AT5G64140RPS28GSP:2 PPI:73See DetailRPS28 (RIBOSOMAL PROTEIN S28); structural constituent of ribosome.
Subcellar localization
cytosol: Pubmed16381842;
Related complex
Ribosome, archaea
Ribosome, eukaryotes
Representative Gene Model Description
AT5G64140.1:RIBOSOMAL PROTEIN S28 (RPS28); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S28e (InterPro:IPR000289); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S28 (RPS28B) (TAIR:AT5G03850.1); Has 802 Blast hits to 802 proteins in 280 species: Archae - 145; Bacteria - 0; Metazoa - 260; Fungi - 104; Plants - 121; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).

Related KEGG pathway    
Genetic Information Processing
   |----------Translation
   |--------------------RibosomeLink to keggView overall Pathway
Database cross-references
TAIR Gene: AT5G64140;
IPI: IPI00522792;
UniParc: UPI0000000E47;
REFSEQ: NP_201219.1;
KEGG: AT5G64140;
LocusSymbolNumber of interactionsAnnotation
AT5G03850AT5G03850GSP:1 PPI:81See Detail40S ribosomal protein S28 (RPS28B).
Subcellar localization
chloroplast    Based on Chloroplast Proteomics data;
Related complex
Ribosome, archaea
Ribosome, eukaryotes
Representative Gene Model Description
AT5G03850.1:40S ribosomal protein S28 (RPS28B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, ribosome, cell wall, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S28e (InterPro:IPR000289); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S28 (RPS28A) (TAIR:AT3G10090.1); Has 804 Blast hits to 804 proteins in 280 species: Archae - 145; Bacteria - 0; Metazoa - 262; Fungi - 104; Plants - 121; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).

Related KEGG pathway    
Genetic Information Processing
   |----------Translation
   |--------------------RibosomeLink to keggView overall Pathway
Database cross-references
TAIR Gene: AT5G03850;
REFSEQ: NP_196005.1;
KEGG: AT5G03850;

query fail :Table 'shiyan_test.at_domain' doesn't exist