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Arabidopsis thaliana Protein Interactome Database

Pair Search Results


Query protein:AT5G64140-AT3G02590Network Display
Predicted Functional Partner
Total likelihood ratio:200
LocusSymbolNumber of interactionsAnnotation
AT5G64140RPS28GSP:2 PPI:73See DetailRPS28 (RIBOSOMAL PROTEIN S28); structural constituent of ribosome.
Subcellar localization
cytosol: Pubmed16381842;
Related complex
Ribosome, archaea
Ribosome, eukaryotes
Representative Gene Model Description
AT5G64140.1:RIBOSOMAL PROTEIN S28 (RPS28); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S28e (InterPro:IPR000289); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S28 (RPS28B) (TAIR:AT5G03850.1); Has 802 Blast hits to 802 proteins in 280 species: Archae - 145; Bacteria - 0; Metazoa - 260; Fungi - 104; Plants - 121; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).

Related KEGG pathway    
Genetic Information Processing
   |----------Translation
   |--------------------RibosomeLink to keggView overall Pathway
Database cross-references
TAIR Gene: AT5G64140;
IPI: IPI00522792;
UniParc: UPI0000000E47;
REFSEQ: NP_201219.1;
KEGG: AT5G64140;
LocusSymbolNumber of interactionsAnnotation
AT3G02590AT3G02590GSP:0 PPI:83See Detaildelta 7-sterol-C5-desaturase, putative.
Subcellar localization
endoplasmic reticulum: Pubmed16381842;
Representative Gene Model Description
AT3G02590.1:delta 7-sterol-C5-desaturase, putative; FUNCTIONS IN: oxidoreductase activity, C-5 sterol desaturase activity, iron ion binding; INVOLVED IN: oxidation reduction, sterol biosynthetic process, fatty acid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: STE1 (STEROL 1); C-5 sterol desaturase (TAIR:AT3G02580.1); Has 1888 Blast hits to 1885 proteins in 323 species: Archae - 0; Bacteria - 403; Metazoa - 324; Fungi - 341; Plants - 224; Viruses - 0; Other Eukaryotes - 596 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT3G02590;
IPI: IPI00538132;
UniParc: UPI00000A8FF4;
REFSEQ: NP_186908.1;
KEGG: AT3G02590;

query fail :Table 'shiyan_test.at_domain' doesn't exist