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Arabidopsis thaliana Protein Interactome Database

Pair Search Results


Query protein:AT5G64140-AT1G03330Network Display
Predicted Functional Partner
Total likelihood ratio:200
LocusSymbolNumber of interactionsAnnotation
AT5G64140RPS28GSP:2 PPI:73See DetailRPS28 (RIBOSOMAL PROTEIN S28); structural constituent of ribosome.
Subcellar localization
cytosol: Pubmed16381842;
Related complex
Ribosome, archaea
Ribosome, eukaryotes
Representative Gene Model Description
AT5G64140.1:RIBOSOMAL PROTEIN S28 (RPS28); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S28e (InterPro:IPR000289); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S28 (RPS28B) (TAIR:AT5G03850.1); Has 802 Blast hits to 802 proteins in 280 species: Archae - 145; Bacteria - 0; Metazoa - 260; Fungi - 104; Plants - 121; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).

Related KEGG pathway    
Genetic Information Processing
   |----------Translation
   |--------------------RibosomeLink to keggView overall Pathway
Database cross-references
TAIR Gene: AT5G64140;
IPI: IPI00522792;
UniParc: UPI0000000E47;
REFSEQ: NP_201219.1;
KEGG: AT5G64140;
LocusSymbolNumber of interactionsAnnotation
AT1G03330AT1G03330GSP:0 PPI:66See Detailsmall nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative.
Subcellar localization
nucleus: Pubmed12444417;
Representative Gene Model Description
AT1G03330.1:small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative; FUNCTIONS IN: molecular_function unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), U6 snRNA-associated Sm-like protein LSm2 (InterPro:IPR016654), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649); Has 577 Blast hits to 577 proteins in 157 species: Archae - 2; Bacteria - 0; Metazoa - 264; Fungi - 157; Plants - 51; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT1G03330;
IPI: IPI00543239;
UniParc: UPI00000AB5B0;
REFSEQ: NP_563682.1;
KEGG: AT1G03330;

query fail :Table 'shiyan_test.at_domain' doesn't exist