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Arabidopsis thaliana Protein Interactome Database

Pair Search Results


Query protein:AT1G05000-SYP31Network Display
Gold Standard Positiverelated
Method: text mining 21036873(yeast-2-hybrid assay:FDS1176001)
LocusSymbolNumber of interactionsAnnotation
AT1G05000AT1G05000GSP:30 PPI:72See Detailtyrosine specific protein phosphatase family protein.
Representative Gene Model Description
AT1G05000.1:tyrosine specific protein phosphatase family protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: tyrosine specific protein phosphatase family protein (TAIR:AT2G32960.1); Has 450 Blast hits to 437 proteins in 100 species: Archae - 0; Bacteria - 32; Metazoa - 3; Fungi - 253; Plants - 83; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).

AT1G05000.2:tyrosine specific protein phosphatase family protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: tyrosine specific protein phosphatase family protein (TAIR:AT2G32960.1).

Related Mutant  
M3718 Related gene:AT1G05000;
Method:insertion site: 1426530,insertion site: 1426537
Phenotype:embryo lethal (unconfirmed)
Related PO:embryo  PO:0009009          
Related Datasource Link:CSHL database
*

Database cross-references
TAIR Gene: AT1G05000;
IPI: IPI00938849; IPI00541248;
UniParc: UPI0001A7B27D; UPI000000C582;
REFSEQ: NP_171993.1; NP_001154304.1;
KEGG: AT1G05000;
LocusSymbolNumber of interactionsAnnotation
AT5G05760SYP31GSP:54 PPI:55See DetailSYP31 (SYNTAXIN OF PLANTS 31); SNAP receptor.
Subcellar localization
golgi: Pubmed16381842; cell plate: Pubmed12427991;
Representative Gene Model Description
AT5G05760.1:SYNTAXIN OF PLANTS 31 (SYP31); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport; LOCATED IN: microsome, cell plate; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: SYP32 (SYNTAXIN OF PLANTS 32); SNAP receptor (TAIR:AT3G24350.1); Has 486 Blast hits to 485 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 168; Fungi - 145; Plants - 84; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).

Related KEGG pathway    
Regulatory Pathways
   |----------Folding, Sorting and Degradation
   |--------------------SNARE interactions in vesicular transportLink to keggView overall Pathway
Database cross-references
TAIR Gene: AT5G05760;
IPI: IPI00531959;
UniParc: UPI00001362E4;
REFSEQ: NP_196195.1;
KEGG: AT5G05760;

query fail :Table 'shiyan_test.at_domain' doesn't exist