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Arabidopsis thaliana Protein Interactome Database

Pair Search Results


Query protein:AT1G05000-ATARCANetwork Display
Gold Standard Positiverelated
Method: text mining 21036873(yeast-2-hybrid assay:FDS1176001)
LocusSymbolNumber of interactionsAnnotation
AT1G05000AT1G05000GSP:30 PPI:72See Detailtyrosine specific protein phosphatase family protein.
Representative Gene Model Description
AT1G05000.1:tyrosine specific protein phosphatase family protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: tyrosine specific protein phosphatase family protein (TAIR:AT2G32960.1); Has 450 Blast hits to 437 proteins in 100 species: Archae - 0; Bacteria - 32; Metazoa - 3; Fungi - 253; Plants - 83; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).

AT1G05000.2:tyrosine specific protein phosphatase family protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: tyrosine specific protein phosphatase family protein (TAIR:AT2G32960.1).

Related Mutant  
M3718 Related gene:AT1G05000;
Method:insertion site: 1426530,insertion site: 1426537
Phenotype:embryo lethal (unconfirmed)
Related PO:embryo  PO:0009009          
Related Datasource Link:CSHL database
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Database cross-references
TAIR Gene: AT1G05000;
IPI: IPI00938849; IPI00541248;
UniParc: UPI0001A7B27D; UPI000000C582;
REFSEQ: NP_171993.1; NP_001154304.1;
KEGG: AT1G05000;
LocusSymbolNumber of interactionsAnnotation
AT1G18080ATARCAGSP:92 PPI:328See DetailATARCA; nucleotide binding.
Subcellar localization
plastid: Pubmed18431481; plasma membrane: Pubmed15574830;
Representative Gene Model Description
AT1G18080.1:ATARCA; FUNCTIONS IN: nucleotide binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosolic ribosome, chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B); nucleotide binding (TAIR:AT1G48630.1); Has 63702 Blast hits to 26655 proteins in 706 species: Archae - 76; Bacteria - 6668; Metazoa - 29017; Fungi - 12763; Plants - 6041; Viruses - 3; Other Eukaryotes - 9134 (source: NCBI BLink).

Related Mutant  
M2174 Related gene:AT1G18080;
Method:In rack1b-1 allele, the T-DNA was inserted in the second exon of RACK1B gene, and in the rack1b-2 allele, the T-DNA was inserted in the first intron ;In rack1c-1 allele, the T-DNA was inserted in the second exon of RACK1C gene, and in the rack1c-2 allele,???
Phenotype: When plants were grown under 10/14 h photoperiod for 48 days, wild-type produced approximately 30 rosette leaves, whereas rack1a-1 single mutant produced 22 rosette leaves(PMID: 18947417)
Related PO:rosette leaf  PO:0000014          
Related Datasource Link:

M2175 Related gene:AT1G18080; AT1G48630;
Method:In rack1b-1 allele, the T-DNA was inserted in the second exon of RACK1B gene, and in the rack1b-2 allele, the T-DNA was inserted in the first intron ;In rack1c-1 allele, the T-DNA was inserted in the second exon of RACK1C gene, and in the rack1c-2 allele,???
Phenotype:We found that while rack1b-2 and rack1c-1 single mutants produced wild-type number of rosette leaves, both rack1b-2 and rack1c-1 significantly enhanced the phenotype of reduced number of rosette leaves of rack1a-1 single mutants (Figure 3A, B).Under these conditions, rack1a-1 rack1b-2 and rack1a-1 rack1c-1 double mutants only produced about 16 and 19 rosette leaves, respectively (Figure ?(Figure3B)(PMID: 18947417)
Related PO:rosette leaf  PO:0000014          
Related Datasource Link:

M2176 Related gene:AT1G18080; AT3G18130;
Method:In rack1b-1 allele, the T-DNA was inserted in the second exon of RACK1B gene, and in the rack1b-2 allele, the T-DNA was inserted in the first intron ;In rack1c-1 allele, the T-DNA was inserted in the second exon of RACK1C gene, and in the rack1c-2 allele,???
Phenotype:We found that while rack1b-2 and rack1c-1 single mutants produced wild-type number of rosette leaves, both rack1b-2 and rack1c-1 significantly enhanced the phenotype of reduced number of rosette leaves of rack1a-1 single mutants (Figure 3A, B).Under these conditions, rack1a-1 rack1b-2 and rack1a-1 rack1c-1 double mutants only produced about 16 and 19 rosette leaves, respectively (Figure ?(Figure3B)(PMID: 18947417)
Related PO:rosette leaf  PO:0000014          
Related Datasource Link:

M2177 Related gene:AT1G18080; AT1G48630; AT3G18130;
Method:In rack1b-1 allele, the T-DNA was inserted in the second exon of RACK1B gene, and in the rack1b-2 allele, the T-DNA was inserted in the first intron ;In rack1c-1 allele, the T-DNA was inserted in the second exon of RACK1C gene, and in the rack1c-2 allele,???
Phenotype:Subsequently, we generated rack1a-1 rack1b-2 rack1c-1 triple mutant. Very few triple mutants could survive in soil. For those survived, they were extremely slow in growth and development, and produced fewest rosette leaves and smallest rosette size among all genotypes examined (Figure 3A芒鈧淒)(PMID: 18947417)
Related PO:rosette leaf  PO:0000014          
Related Datasource Link:
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Database cross-references
TAIR Gene: AT1G18080;
IPI: IPI00524816;
UniParc: UPI000000144D;
REFSEQ: NP_173248.1;
KEGG: AT1G18080;

query fail :Table 'shiyan_test.at_domain' doesn't exist