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Arabidopsis thaliana Protein Interactome Database

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Query protein:AT1G05000-AGB1Network Display
Gold Standard Positiverelated
Method: text mining 21036873(yeast-2-hybrid assay:FDS1176001)
LocusSymbolNumber of interactionsAnnotation
AT1G05000AT1G05000GSP:30 PPI:72See Detailtyrosine specific protein phosphatase family protein.
Representative Gene Model Description
AT1G05000.1:tyrosine specific protein phosphatase family protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: tyrosine specific protein phosphatase family protein (TAIR:AT2G32960.1); Has 450 Blast hits to 437 proteins in 100 species: Archae - 0; Bacteria - 32; Metazoa - 3; Fungi - 253; Plants - 83; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).

AT1G05000.2:tyrosine specific protein phosphatase family protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: tyrosine specific protein phosphatase family protein (TAIR:AT2G32960.1).

Related Mutant  
M3718 Related gene:AT1G05000;
Method:insertion site: 1426530,insertion site: 1426537
Phenotype:embryo lethal (unconfirmed)
Related PO:embryo  PO:0009009          
Related Datasource Link:CSHL database
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Database cross-references
TAIR Gene: AT1G05000;
IPI: IPI00938849; IPI00541248;
UniParc: UPI0001A7B27D; UPI000000C582;
REFSEQ: NP_171993.1; NP_001154304.1;
KEGG: AT1G05000;
LocusSymbolNumber of interactionsAnnotation
AT4G34460AGB1GSP:176 PPI:277See DetailAGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein binding.
Subcellar localization
golgi: Pubmed17158913; plasma membrane: Pubmed16679415; nucleus: Pubmed17492287; cytosol: Pubmed17158913;
Representative Gene Model Description
AT4G34460.1:GTP BINDING PROTEIN BETA 1 (AGB1); FUNCTIONS IN: protein binding, GTPase activity, nucleotide binding; INVOLVED IN: in 11 processes; LOCATED IN: endoplasmic reticulum, plasma membrane, CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943), Guanine nucleotide-binding protein, beta subunit (InterPro:IPR016346), G-protein, beta subunit (InterPro:IPR001632); BEST Arabidopsis thaliana protein match is: HOS15 (high expression of osmotically responsive genes 15) (TAIR:AT5G67320.1); Has 44471 Blast hits to 21257 proteins in 637 species: Archae - 42; Bacteria - 5663; Metazoa - 20246; Fungi - 8331; Plants - 3987; Viruses - 0; Other Eukaryotes - 6202 (source: NCBI BLink).

AT4G34460.2:GTP BINDING PROTEIN BETA 1 (AGB1); FUNCTIONS IN: protein binding, GTPase activity, nucleotide binding; INVOLVED IN: in 11 processes; LOCATED IN: endoplasmic reticulum, plasma membrane, CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), Guanine nucleotide-binding protein, beta subunit (InterPro:IPR016346), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), G-protein, beta subunit (InterPro:IPR001632); BEST Arabidopsis thaliana protein match is: HOS15 (high expression of osmotically responsive genes 15) (TAIR:AT5G67320.1); Has 41505 Blast hits to 20133 proteins in 630 species: Archae - 44; Bacteria - 5731; Metazoa - 18296; Fungi - 7871; Plants - 3868; Viruses - 0; Other Eukaryotes - 5695 (source: NCBI BLink).

AT4G34460.3:GTP BINDING PROTEIN BETA 1 (AGB1); FUNCTIONS IN: protein binding, GTPase activity, nucleotide binding; INVOLVED IN: in 11 processes; LOCATED IN: endoplasmic reticulum, plasma membrane, CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), Guanine nucleotide-binding protein, beta subunit (InterPro:IPR016346), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), G-protein, beta subunit (InterPro:IPR001632); BEST Arabidopsis thaliana protein match is: TAF5 (TBP-ASSOCIATED FACTOR 5); nucleotide binding / transcription regulator (TAIR:AT5G25150.1); Has 39670 Blast hits to 20015 proteins in 574 species: Archae - 46; Bacteria - 5126; Metazoa - 17309; Fungi - 7921; Plants - 3706; Viruses - 0; Other Eukaryotes - 5562 (source: NCBI BLink).

AT4G34460.4:GTP BINDING PROTEIN BETA 1 (AGB1); FUNCTIONS IN: protein binding, GTPase activity, nucleotide binding; INVOLVED IN: in 11 processes; LOCATED IN: endoplasmic reticulum, plasma membrane, CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), Guanine nucleotide-binding protein, beta subunit (InterPro:IPR016346), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), G-protein, beta subunit (InterPro:IPR001632); BEST Arabidopsis thaliana protein match is: HOS15 (high expression of osmotically responsive genes 15) (TAIR:AT5G67320.1); Has 44346 Blast hits to 21268 proteins in 637 species: Archae - 38; Bacteria - 5549; Metazoa - 20177; Fungi - 8319; Plants - 4028; Viruses - 0; Other Eukaryotes - 6235 (source: NCBI BLink).

Related Mutant  
    M5178 Related gene:AT4G34460;
    Method:NULL
    Phenotype:The leaf morphologies of agb1-1 and agb1-2 appeared to be more strongly affected by BRZ than those of the WT and gpa1-4 (Fig. 1A) BRZ also inhibited hypocotyl elongation in the dark more severely in agb1-1 and agb1-2 than in the WT and gpa1-4 (Fig. 1B).(PMID: 23814276)|The leaf morphology of BZR1/a was similar to that of agb1-1 rather than that of the WT (Fig. 3A). The cotyledon greening rate in the presence of ABA was in the order of BZR1/WT > WT > BZR1/a > agb1-1 (Fig. 3B)(PMID: 23814276)
    Related PO:cotyledon  PO:0020030    
    Related Datasource Link:
    *

    Database cross-references
    TAIR Gene: AT4G34460;
    IPI: IPI00846426; IPI00548040; IPI00546904; IPI00545688;
    UniParc: UPI00015055A7; UPI0000196ED3; UPI000034F173; UPI000012B21C;
    REFSEQ: NP_001078491.1; NP_195172.1; NP_849494.2; NP_974683.1;
    KEGG: AT4G34460;

    query fail :Table 'shiyan_test.at_domain' doesn't exist